Pseudodesulfovibrio cashew: GM415_08320
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Entry
GM415_08320 CDS
T06353
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psel
Pseudodesulfovibrio cashew
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psel03009
]
GM415_08320 (rlmD)
Enzymes [BR:
psel01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GM415_08320 (rlmD)
Ribosome biogenesis [BR:
psel03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GM415_08320 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
MTS
Methyltransf_25
Cons_hypoth95
Methyltransf_15
Methyltransf_12
N6_N4_Mtase
PrmA
Methyltransf_11
Methyltransf_32
Methyltransf_23
TPMT
Met_10
PCMT
TehB
Motif
Other DBs
NCBI-ProteinID:
QGY40130
UniProt:
A0A6I6JGJ6
LinkDB
All DBs
Position
1848080..1849462
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AA seq
460 aa
AA seq
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MPLEKDSTIQCEIESLAYGGRGVARVDGMAVFVAGGLPGDVVRARVVKAKKRFAEAVTEE
VVTPSPKRVEPACPHFGVCGGCAVQDLEYAEQLAQKNGQVENALRRIGGVETPVMDAPVA
SPAIYRYRNKMEFAFEGRDGELFLGLRANPEPGERIGQVLDLTECHLCAVRDMEMVHFVR
DFCRESNVAAYHPPTDTGFWRHLVLRHTSIGQVQVHLITTADERKYNLPEELGEALIDRF
PEIMSFVHSLRTKRSTVAYGEQAIFRLGHKFVEERLPKGESMVRYHLAPNTFFQTNTGGA
AELFATVAEYAALTGHETVLDLYCGAGAIGIYLADQAGQVIGYEINEEAIGKAWASAKLN
RINNCEFHALSLESGIEGVDDLPTPDVVVIDPPRSGIQEKTAESLLRLAPPRIVAVSCDP
TTLARDVKRLSGKYALERVRAVDMFPHTHHVETVALLVKK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgccccttgaaaaagacagcaccatacaatgtgaaatagaatctctggcctacggcgga
cgcggcgtggcgcgcgtggacggcatggccgtattcgtagcgggcggcctgcccggcgat
gtggtcagggcacgtgtggtcaaggccaagaagcggttcgccgaggccgtgaccgaagag
gtcgtcaccccgtcgcccaagcgcgtcgagcctgcctgtccccatttcggggtttgcggc
ggctgcgccgtgcaggatctggaatacgcggaacaactcgcccagaagaacggtcaggtg
gagaacgcgttgcgtcgcatcggcggcgtggagactccggtcatggacgctcctgtggca
tcgcccgccatctaccgctaccgcaacaagatggagttcgctttcgaagggcgcgacgga
gagctgttcctcggtctgcgagccaacccggagcccggcgagcgaatcgggcaggttctc
gatttgactgagtgccacctctgcgcggtgcgagacatggagatggtgcacttcgtgcgc
gacttctgccgcgaatccaacgttgctgcctatcatccgcccacggacaccggcttctgg
cggcaccttgtcctccgccacacttccatcggccaggttcaggtccatctgatcaccact
gcggacgagcgcaagtacaatctgcccgaggaattgggcgaggcgctgatcgaccgcttc
ccggagatcatgtcttttgtccactccctccgcaccaagcgttcgaccgtcgcctacggc
gagcaggccatcttccgcctgggccacaagttcgtggaggagcggctgcccaagggcgag
tccatggtgcgctatcacctcgcgcccaatacctttttccagaccaacaccgggggcgcg
gccgaactcttcgccaccgtggcagaatacgccgcccttaccggtcacgagaccgtcctc
gacctttactgcggggccggtgccatcggcatctatctcgccgaccaggccggacaggtc
atcggctacgagatcaacgaggaggccatcggcaaggcatgggcctctgccaaactgaac
cgcatcaacaattgcgaatttcacgcgctctccctcgaatccggcatcgagggcgtggat
gatctgcccaccccggacgtggttgtgatcgatccgccccggtccggcattcaggagaag
accgccgagtccttgctgcggctggcgccgccgcgcatcgtggctgtttcgtgcgatccg
accacgctcgcgcgcgatgtgaagcggttgtccggcaagtatgcgctcgagcgcgttcgg
gccgtggatatgtttccgcatacacatcatgtggagacggtggccctgctggttaagaag
tag
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