Pseudooceanicola spongiae: F3W81_12390
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Entry
F3W81_12390 CDS
T06866
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pshq
Pseudooceanicola spongiae
Pathway
pshq00521
Streptomycin biosynthesis
pshq00523
Polyketide sugar unit biosynthesis
pshq00525
Acarbose and validamycin biosynthesis
pshq00541
O-Antigen nucleotide sugar biosynthesis
pshq01055
Biosynthesis of vancomycin group antibiotics
pshq01100
Metabolic pathways
pshq01110
Biosynthesis of secondary metabolites
pshq01250
Biosynthesis of nucleotide sugars
Module
pshq_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
F3W81_12390 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
F3W81_12390 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
F3W81_12390 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
F3W81_12390 (rfbB)
00525 Acarbose and validamycin biosynthesis
F3W81_12390 (rfbB)
Enzymes [BR:
pshq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
F3W81_12390 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
adh_short_C2
NmrA
NAD_binding_10
DUF6301
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
QOL81550
UniProt:
A0A7L9WR39
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All DBs
Position
complement(2642009..2643046)
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AA seq
345 aa
AA seq
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MKLLVTGGAGFIGSAVVRLAIAQGHEVVNLDALTYAACLDNVASVADNAGYAFEEADIRD
AAALKRVFDTHQPDAVMHLAAESHVDRSIDGPGSFIDTNVTGTYTLLEAARAYWDGRGRP
EAFRFHHISTDEVFGTLGETGMFTEETPYAPNSPYSASKAASDHLVRAWHETYGLPVVLS
NCSNNYGPFHFPEKLIPVVILNALAGKDIPVYGAGLNVRDWLFVEDHATALLTVVTKGEV
GRSYNIGGNAEARNIDLVHMICTLLDDLRPAAKPYAEQIRYVTDRPGHDLRYAIDATRIR
DELGWTPTVTLAEGLAFTIQWYLDNEAWWTALQNREGVGKRLGVA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgctggtcacagggggcgcgggcttcatcgggtctgcagtggtgcgtctggcg
attgcgcagggtcatgaggtcgtcaacctcgatgcgctgacctatgcggcgtgcctggat
aacgtcgcctctgtggcggacaacgccggctatgcgttcgaggaggccgacatccgcgac
gccgccgcgctgaagcgcgtcttcgacacccatcaacccgatgccgtgatgcaccttgcc
gcagagagccatgtcgaccgctcgatcgacgggccgggcagcttcatcgacaccaatgtc
accggcacctacaccctgctggaggccgcgcgcgcctattgggacggtcgcggccgcccc
gaggcgttccgctttcaccacatctcgaccgacgaggtgttcggcacgctgggcgagacg
gggatgttcaccgaagagacgccctatgcccccaacagcccctattcggccagcaaggca
gcctcggatcacctggtgcgcgcctggcatgagacctatggtctgccggtggtgctgtcg
aactgctccaacaactacggcccctttcacttccccgaaaagctgatccccgtggtcatc
ctgaacgccttggcgggcaaggatattccggtctatggcgctggtctgaacgtgcgtgac
tggctgttcgtcgaagatcacgccacggctctgctgaccgttgtcaccaagggcgaagtc
gggcgcagctacaacatcggcggcaacgccgaggcgcgcaatatcgacctggtgcacatg
atctgcactctgctggacgatctgcgccctgccgccaaaccctatgccgagcagatccgc
tatgtcactgaccggcccggccacgacctgcgctatgccatcgacgcgacccgcatccgg
gatgagctgggctggaccccgaccgtgaccctcgccgagggtctggcgttcacaatccag
tggtatctcgacaacgaggcctggtggacggccttgcaaaatcgggagggcgttggaaaa
cgccttggtgtcgcatga
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