Pseudomonas siliginis: NF676_08030
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Entry
NF676_08030 CDS
T08569
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
psii
Pseudomonas siliginis
Pathway
psii02020
Two-component system
psii02025
Biofilm formation - Pseudomonas aeruginosa
psii02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NF676_08030
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NF676_08030
09142 Cell motility
02040 Flagellar assembly
NF676_08030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psii03000
]
NF676_08030
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
psii02035
]
NF676_08030
Transcription factors [BR:
psii03000
]
Prokaryotic type
Helix-turn-helix
Other families
NF676_08030
Bacterial motility proteins [BR:
psii02035
]
Flagellar system
Flagellar assembly proteins
Others
NF676_08030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
AAA_7
nSTAND3
AAA_22
bpMoxR
AAA
GAAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UST81258
LinkDB
All DBs
Position
1696170..1697645
Genome browser
AA seq
491 aa
AA seq
DB search
MWRETKILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVGSLSSSREVICVLIGTV
NAPGALLGLLKTLATWDEFLPVLLMGDNSSVDLPEDQRRRVLSTLEMPPSYSKLLDSLHR
AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
EVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEIGSFR
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPG
NVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTPD
FSANALLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
SRAGGDEQADD
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaaaattctgctgatcgatgacgatagcgtccgccgccgcgacctg
gcggtgattctaaattttcttggcgaagaaaatttaccctgcggcagccatgactggcag
caggcagtcggctctttgtcgtctagtcgtgaagtcatttgcgtactgatcgggaccgtt
aatgctcctggcgcgcttttgggcttgctaaagacactcgcaacctgggatgagttcctt
ccggttttgttaatgggcgataattcttccgttgacctgcctgaagaccagcgtcgccgc
gtgctgtcgaccctggaaatgccgcccagctacagcaaattgctcgattcgctgcatcgc
gcccaggtctatcgcgaaatgtacgaccaggcccgcgaacgcggccgtcatcgcgaaccc
aatcttttccgcagtcttgtcggcaccagccgtgcgattcagcacgtccggcagatgatg
cagcaagtggccgacaccgacgccagcgtgctgatcctcggcgagtccggcaccggcaag
gaagtggtcgcgcgcaacctgcactaccactccaaacgccgcgacgcgccattcgtgccg
gtcaactgcggggcgatcccggcagagctgctggaaagcgaactgttcggccacgagaag
ggcgccttcactggcgcgatcaccagccgtgccgggcgctttgagctggccaacggcggc
acgctgtttctcgacgaaatcggcgacatgccgctgccgatgcaggtcaagctgctgcgc
gtattgcaagagcgcaccttcgaacgcgtgggcagcaacaagacccagagcgtcgacgtg
cgcatcattgccgcaacgcacaagaatctcgaaagcatgatcgagatcggctcgttccgt
gaagacctctactatcgcctgaacgtgttcccgatcgagatggcgccactgcgtgagcgc
gtcgaagacatcccgctgctgatgaacgaactgatctcgcgcatggagcacgagaagcgc
ggttcgatccgtttcaactcggcggcgatcatgtcgctgtgccgtcacggctggccgggc
aacgtccgcgagctggccaacctggtcgagcgcatggcgatcatgcacccgtacggggtg
attggcgtggtcgagttgccgaagaaattccgctacgtcgacgacgaagacgagcagatg
gtcgacagcctgcgcagcgatctggaagaacgcgtggccatcaacggccatacgccggac
ttcagcgccaatgcactgctgccgcctgaaggtctggacctcaaggattacctcgggggc
ctggagcagggcctgattcagcaagcgctggacgacgccaatggcattgttgcacgcgcc
gctgagcgtctgcgcatccgtcgcacaaccttggtcgagaagatgcgcaagtacggcatg
agccgggccggaggagatgaacaggcggatgattga
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