Pseudomonas siliginis: NF676_18460
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Entry
NF676_18460 CDS
T08569
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psii
Pseudomonas siliginis
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psii03032
]
NF676_18460 (topA)
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_18460 (topA)
Enzymes [BR:
psii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NF676_18460 (topA)
DNA replication proteins [BR:
psii03032
]
Prokaryotic type
DNA Topoisomerases
NF676_18460 (topA)
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NF676_18460 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UST78140
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Position
complement(4008752..4011385)
Genome browser
AA seq
877 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVSRMGVDPEHGWKAQYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTTKGST
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEDEFGKKYLPETPN
VYSSKEGAQEAHEAIRPSDANTTPSKLAGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAENPDSGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPECKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEILPHKDEIDPKYHFLCEAPQKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVEDKRSAKAKAE
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagagccggccgccaagcgcggcaaggctgctgcgggcgaa
ggtccggtgctctcgccgaaagagaaagcgcgcaagcagctggtctcgcgcatgggcgtc
gatcccgaacacggctggaaagcccagtacgagatcctcccgggcaaagaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgt
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgatccaggaagccttctccgag
ccgggcgagctggacattgatcgtgtcaacgcccagcaggcgcgtcgcttccttgaccgc
gtcgtcggctacatggtctcgccgctgctgtgggccaagatcgcccgtggtctgtccgcc
ggtcgcgtgcaatcggttgcggtgaagctggtagtcgagcgtgagcgtgaaatccgtgct
ttcaatcccgaagaatactgggaagtgcacgctgatctcggcaccaccaaaggctcgacc
gtgcgtttcgaagtggctcgcgaaaaaggcgaagccttcaagccgctgaacgaagcccag
gccatggctgcgctggagaagctcaagtcctccagttacagcatcgtcaagcgcgaagac
aaaccgaccagcagcaagccgtcggcgccgttcatcacgtcgaccttgcagcaggctgcg
agcaaccgcctcggtttcggcgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacttacatgcgtaccgactcgaccaatctctcggccgacgccgtggcg
atggcgcgcacctacatcgaagacgaattcggcaagaagtacctgccggaaacgccgaac
gtttacagcagcaaggaaggcgcgcaagaggctcacgaagcgattcgtccgtccgacgcc
aataccacgccgagcaagctggcgggtatggagcgcgatgccgagcgtctgtatgagctg
atctggcgccagttcctagcctgccagatgctgccggcgcagtacctgtcgaccaccgtc
agcgtcggcgctggcgacttcgagctgcgtgccaagggccgtatcctcaagttcgacggt
tacacccgggtgatgccgcaaattgccaagcctggcgatgatgacgtgctgccggacatg
gcccagggcgatgtgatgaagctgatcaagcttgacccgtcgcagcatttcaccaagcca
ccggcgcgttattccgaagccagtctggtcaaggagatggaaaaacgcggcatcggtcgt
ccttcgacttacgctgcgatcatttcgaccattcaggatcgcggttatgtgaccctgcac
aaccgtcgtttctactcggaaaagatgggtgacatcgtcaccgaacgtctgtccgagagc
ttctccaatctcatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcgcagggcgagcgcgactggaaaaacgtgctggacgagttctatggcgacttcaagaag
aaactcgaagtagcggaaaacccggacagcggcatgcgcgccaaccagccggtcatgact
gacattccgtgcaccacttgcggtcgtccgatgcagattcgtaccgcatcgactggcgtg
ttcctcggctgttcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaac
ctggtgccgggcgatgaaatcgcagcggacgacgagggcgaatcggaatcgctggtactg
cgtggcaagcatcgctgcccgatctgcagcacggcgatggacgcctacctgctggacgag
aagcgcaaattgcatatctgcggcaacaacccggattgcgccggttacgaaattgaagaa
ggcagctatcgcatcaagggctatgaaggtccgagcctggaatgcgacaagtgcggcagc
gaaatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaaccctgagtgc
aagaacacccgcaagttgctgaagagcggtgacgcggcgccgccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacatcctgcgcgatggtgcg
tccggtctgttcctggccgccagtcagttcccgaaaaaccgcgagactcgcgctccgctg
gtgatcgagattctgccgcacaaggacgagatcgatccgaagtaccacttcctgtgcgag
gctccgcaaaaggatcctgacggtctgccagcggtcatccgctacagccgcaagaccaag
gagcaatacgtacagaccgaagtcgacggcaagccgacaggctggaaagcgtattacgac
ggtggcaagtggactgttgaagacaagcgcagcgcaaaggccaaggctgagtaa
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