Phocoena sinus (vaquita): 116740611
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Entry
116740611 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1-like
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psiu03016
]
116740611
Enzymes [BR:
psiu01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
116740611
Transfer RNA biogenesis [BR:
psiu03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
116740611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
116740611
NCBI-ProteinID:
XP_032462258
Ensembl:
ENSPSNG00000017350
LinkDB
All DBs
Position
15:73789832..73946769
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AA seq
730 aa
AA seq
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MDPSLDMWDFSSLISLWINRFYIYLGFAFGFSLWICFQIVIRKQNKNSQEKTVPKASRDL
MTNGYISLQKKEVFVSGVKIFYGSQTGKAEGFATVLAEAVSSLDLPVAVINLKEYDPDDH
LVEEVTSKNVSAFLVATYTDGRPTESAEWFCRWLEEAANDFRFGKTYLKGVRYAVFGLGN
SAYVNHFNKVGKNVDKWLWMLGAHRVMSRGDGDCNVVKSKHGSIEADFTAWKARFISRLQ
ALCKGERKPCGGNCKKGKCESNQHGSEAMEPGSHAQEGFHQRDAEQEEPFGSTSEEESGT
EDHQSLKSVIDVEDLGKIMDRMKKEKREKERQEGETSLIRSTVKSEAGERRAMITPALRE
ALTKQGYQLIGSHSGVKLCRWTKACLRGRGGCYKHTFYGIESHRCXETTPSLACANKCVF
CWRHHTNPVGTEWRWKMDQAEMILKEAIENHQNVMKQFPGVPGVREERFEEGMTVKHCAL
SLVGEPIMYPEINRFLKLLHERKISSFLVTNAQFPAEIRNLKPVTQLYVSVDASTKESLK
KIDRPLFKDFWQRFLDSLKALAAKQQRTVYRLTLVKAWNVDELQAYAKLVSLGNPDFIEV
KGVTYCGESSASSLTMANVPWHEEVVRFVCELVDLIPDYEIACEHEHSNCLLIAHKKFKI
GREWWTWIDYSRFQELIQEYEDSGGSKTFSAKDYMAKTPHWALFGASERGFDPKDTRYQR
KNKSKDISGC
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggatccttctttggatatgtgggacttctcatctttaatatcattatggataaacagg
ttttacatatatttgggctttgcctttggctttagcctttggatttgtttccagattgtc
atcagaaagcagaacaaaaactcacaggagaaaaccgttccgaaagcatctcgggatttg
atgacaaatggctatatctctcttcaaaagaaggaagtctttgtgtctggagtgaagatt
ttctatggttctcagactggcaaagcagagggatttgcgacagttcttgccgaagcagtt
agctcccttgatctccctgtggcagttattaatctgaaggaatatgacccagatgaccat
ctagtggaagaggttaccagtaaaaatgtctctgccttcctggttgctacctacactgac
ggtcggccgactgagagcgcagagtggttctgcaggtggctagaggaagcagccaatgac
tttcgatttggcaaaacgtacctgaagggtgtgagatacgcagtgtttggcctgggaaat
tctgcgtacgtgaaccacttcaacaaggtggggaagaacgtggacaagtggctctggatg
ctcggcgcccatcgtgtgatgtcccgaggggacggtgactgcaacgtggttaaaagcaaa
cacggcagcattgaggccgacttcacagcgtggaaggctaggttcatctcccggctacag
gcgctctgtaaaggagagagaaaaccctgtggtggcaactgcaagaagggcaaatgcgag
tctaatcagcacggctcagaggcaatggagccagggtctcacgcccaagagggattccat
cagagagacgctgagcaggaagagccctttgggagcaccagtgaggaagagtctggtact
gaggaccatcagagtctaaaatctgtcattgatgttgaagacctcggcaagattatggat
cgtatgaagaaagaaaagagagaaaaggagcggcaggaaggggaaactagtttgatcagg
agcacagtgaagagtgaagccggtgaaagaagagctatgataactcctgctctccgagaa
gcccttactaaacaaggttatcagttgattgggagccactctggggtgaagctttgcagg
tggacaaaggcatgcctccgagggagaggaggttgctataaacatacgttctatggcatt
gaaagccaccgttgcnatgaaactaccccgagcttggcgtgtgcaaataaatgtgtcttc
tgttggcggcaccacaccaatccagtgggtactgaatggcggtggaagatggaccaggct
gaaatgatcttaaaggaagccattgaaaaccatcagaacgtgatgaagcaatttcctgga
gtgccaggtgtcagagaggaacgctttgaggaaggaatgacagtaaagcactgtgcatta
tcccttgtgggagaacccatcatgtacccagaaatcaacaggtttttgaagctactccac
gagcgtaaaatctccagtttcctggtcacaaatgcacagttccctgcggaaatcaggaac
ctcaaaccagttacccagctatacgtcagtgtggacgccagcaccaaagagagcctgaag
aaaattgaccgcccgctcttcaaggatttctggcaaagattcctcgacagtttaaaagcc
ttggctgcaaagcaacaacgtactgtctataggctgactctggtgaaagcatggaacgtg
gatgaactccaggcctatgccaagctggtgtccctggggaaccctgacttcatcgaggtg
aagggtgttacctactgtggagagagttcggcaagcagtcttaccatggccaacgtgccc
tggcacgaagaagtggtgcgctttgtctgtgagttggtggatctgatccccgactatgaa
attgcttgtgaacacgaacattccaactgcctcctgatagctcacaagaagtttaagatt
ggcagagaatggtggacgtggattgattacagccgcttccaggagctcatccaggaatat
gaagacagtggtggatccaaaactttcagtgccaaggattacatggccaaaactcctcac
tgggcgttatttggtgccagcgaaagaggctttgatcccaaggacacaagatatcagaga
aagaacaaatcaaaggatatatctggatgttga
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