Phocoena sinus (vaquita): 116741766
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Entry
116741766 CDS
T07759
Name
(RefSeq) cadherin-23 isoform X1
KO
K06813
cadherin 23
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
psiu03037
]
116741766
04515 Cell adhesion molecules [BR:
psiu04515
]
116741766
Cilium and associated proteins [BR:
psiu03037
]
Primary cilia and associated proteins
USH complex and associated proteins
116741766
Cell adhesion molecules [BR:
psiu04515
]
Cadherins
Major cadherins
116741766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Sde0182_C
Motif
Other DBs
NCBI-GeneID:
116741766
NCBI-ProteinID:
XP_032464665
Ensembl:
ENSPSNG00000009904
LinkDB
All DBs
Position
16:23907736..23997478
Genome browser
AA seq
2303 aa
AA seq
DB search
MDRTAWGHQQTGFLVGDEKDVSLSSPTPPASWETMGLGRTGWEWCEGRGGTPETPSLPVS
GIQGVTMYLILPQLTATDADEGEFGRVWYRILHGNHGNNFWIHVSSGLLMRGPRPLDRER
NSSHVLIVEAYNHDLGPMRSSVRVIVYVEDVNDEAPVFTQQQYSRLELRETAGIGTSVIV
VRATDRDTGDGGLVKYRILSGAEGKFEIDESTGLIVTVDYLDYETKTSYLMNVSATDQAP
PFNQGFCTVYITLLNELDEAVQFSNASYEVAILENLALGTEIVRVQAYSIDNLNQITYRF
DAYTSAQAKALFKIDAITGVITVKGLVDREKNDFYTLTVVADDGGPKVDSTVKVYITVLD
ENDNSPRFDFTSDSAVSVPEDCPVGQRVAIVKARDPDAGSNGQVVFSLASGNIAGAFEII
TTNDSIGEVFVARPLDREELDHYILKVVASDRGTPPRKKDHILQVTILDVNDNPPVIESP
FGYNVSVNENVGGGTAVVQVRATDRDIGINSVLSYYITEGNEDMTFRMDRISGEIATRPA
PPDRERQSFYHLVVTVEDEGTPTLSATTHVYVTIVDENDNAPTFQQPHYEILLDEGPDTI
NASLVTVQALDPDEGPNGTVTYAIVAGNIIDTFHIDRHTGVIYAAKELDYEISHGRYTLI
VTATDQCPILSHRLTSTTTVLVNVNDINDNVPTFPRDYEGPFDVTEGQPGPRVWTFLAHD
RDSGPNGQVEYSIVDGDPLGEFLISPVEGVLRVRKDVELDRETIAFYNLTICARDRGVPP
LSSTMLVGIRVLDINDNDPVLLNLPMNITISENIPVSSFVTRILASDADSGCNALLTFNI
TAGNRERAFSINATTGIVTVNRPLDRERIPEYKLTISVKDNPENPRIARRDFDFLLIFLA
DENDNHPLFTESTYLAEVMENSPAGTPLTVLNGPILALDADLDVYAVVTYQLLGAQSGLF
DIDNSTGVVTVRSGVTIDREAFSPAVLELLLLAEDIGLLNGTADLIVTILDDNDNWPTFS
PAALTVHLLENCPPGFSVLQVTATDEDSGLNAELIYRIEAGAQDRFTIHPVTGVIRVGNV
TIDREEQESYRLTVVATDRGTIPLSGTAIITILIDDINDSRPEFLNPIQTVSVLESAEPG
TVIANVTAIDRDLNPKLEYHIISIVAKDDTDRLVPDQEDAFAVNINTGSVMVKSPLNREL
VATYEVTLSVTDKASDLPELSVSVPNAKLTVNILDVNDNTPQFKPFGITYYTERILEGAT
PGTTLIAVAAVDPDKGLNGLITYSLLDLIPPGYVQLEDSSAGKVIANRTVDYEEVHWLNF
TVRASDNGSPPRAAEIPVYLEIVDINDNNPIFDQLSYQGAIFEDVPVGTVILRVTATDAD
SGNFALIEYSLVDGEGKFAINPNTGDIYVLSSLDREEKAHYILTALAKDNPGDVASNRRE
NSVQVVIQVLDINDCRPQFSKPQFSTSVYENEPAGTSVITMMATDQDEGSNAELAYSLEG
PGVEAFHVDMDSGLVTTKRPLKSYERFNLTVVATDGGQPPLWGTAMLLVEVIDVNDNRPV
FVRPPNGTILHIKEEIPLRSNVYEVYATDEDEGLNGAVRYSFLKTTGNRDWEYFTIDPVS
GLIQTAQRLDREKQAVYSLILVASDLGQPVPYETMQPLQVALEDIDDNEPLFVRPPKGSP
QYQLMTVPEHSPRGTLVGNVTGAVDADEGPNAIVYYFIAAGDEEKNFQLQPDGRLLVLRD
LDREREAVFSFIVKASSNRSWTPPRGHSPALDLATDLTLQEVRVVLEDINDQPPRFTKAE
YTAGVATDAKMGSELIQVLALDADIGNNSLVFYSILAIHYFRAFANDSEDVGQVFTMGSV
DGILRTFDLFMAYSPGYFVVDIVARDLAGHNDTAIIGIYILRDDQRVKIVINEIPDRVRG
FEEEFIRLLSNITGAIVNTDDVQFHVDTKGRVNFAQTELLIHVVNRETNRILDVDRVIQM
IDENKEQLRNLFRNYNVLDVQPAISVQLPEDMSALQMATIVLALLLFLAAMLFILMNWYY
RTVHKRKLKAIVAGSAGNRGFVDIMDMPNTNKYSFDGANPVWLDPFCRNLELAAQAEHED
DLPENLSEIADLWSSPTRTHGTFGREPAAVKPDDDRYLRAAIQEYDNIAKLGQIIREGPI
KGSLLKVVLEDYLRLKKLFAQRMVQKASCHSSISELIQTELEEEPGERSPGQGSLHFCHK
PPTELKGPDGIHVTHGSTGTLLATDLNSLPEDDQKGLGRSLETLTAAEASAFERNARTES
AKSTPLHKLRDVIVESPLEITEL
NT seq
6912 nt
NT seq
+upstream
nt +downstream
nt
atggacaggacagcatggggccatcagcagacaggtttcctagtgggggatgagaaagat
gtgtctctctcctctcccacacccccagcctcgtgggaaaccatgggtttaggcaggacg
ggctgggagtggtgtgagggaaggggagggactccagaaacaccttctctgcctgtgagt
ggaattcaaggagtaaccatgtatctcattctccctcagctaacagccacggatgcggac
gagggcgagtttgggcgtgtatggtaccgcatccttcacggcaaccatggcaacaacttc
tggatccatgtcagcagtgggctcctaatgcgagggccccggcccctagaccgggagcgg
aactcgtcccacgttcttatagtggaggcctacaaccatgacctgggccccatgcggagc
tccgtcagggtgatagtatacgtggaggatgtcaacgacgaggccccagtgttcacgcag
cagcagtacagccgcctggagcttcgcgagacggcgggcatcggcacgtcggtcatcgtc
gtccgagccacggaccgagacactggggatggtggcctggtgaagtaccgcatcctgtca
ggcgcggaggggaagttcgagattgatgagagcacggggcttattgtcaccgtggattac
ctggactacgagaccaagaccagctacctgatgaacgtgtccgccaccgaccaggcaccc
cccttcaaccagggcttctgcactgtctacatcactctgctcaacgagctggacgaagct
gtgcaattctccaacgcctcctacgaggtcgccatcctggagaacctggcactgggcacc
gagatcgtacgggtccaggcctactccattgacaacctcaaccagatcacctaccgcttt
gatgcctacaccagcgcccaggccaaagccctcttcaagatagatgccatcacgggtgtg
atcaccgtcaagggcctggtggaccgggagaaaaacgacttctacaccttgacggtggtg
gcagacgacggcggccccaaggtggactccaccgtgaaggtctacatcactgtgctggac
gagaatgacaacagcccccggttcgacttcacgtccgactcggccgtcagtgtgcccgag
gactgccccgtgggccagcgcgtggccattgtcaaggcccgggaccccgacgccggcagc
aacgggcaggtggtcttctccctggcctctggcaacattgccggggcctttgagatcatc
accaccaacgactccattggcgaagtgtttgtggccagacccctggacagagaagagctg
gaccactacatcctcaaggttgtggcatccgaccgtggcacccctccacgcaagaaggac
cacatcctgcaggtgaccatcctggatgtcaatgacaaccccccggtgatcgagagcccc
tttggatacaacgtcagcgtcaacgagaatgtgggcgggggtaccgctgtggtccaggtg
agagccactgaccgtgacatcgggatcaacagcgtcctgtcctactacatcactgagggc
aatgaggacatgaccttccgcatggaccgcatcagtggcgagattgccacgcggcctgca
ccacccgaccgtgagcgccagagcttctaccacctggtggtcaccgtggaggatgagggc
acccctaccctgtcggccaccacccacgtgtatgtgaccatcgtggacgagaacgataac
gcacccacgttccagcagccccactacgagatcttactggatgagggcccggacacaatc
aatgccagcctcgtcaccgtccaggcactagacccggatgaggggcccaacggcacagtt
acctatgccatcgttgccggcaacatcatcgacacctttcacatcgacaggcacacgggc
gtcatctatgctgccaaggagctggactacgagatcagccatggccgctacaccctgatc
gtcaccgccacggaccagtgtcccatcttgtcccatcgcctcacctctaccaccacggtg
cttgtgaacgtgaatgacatcaacgacaatgtgcccaccttccccagagactacgaggga
ccatttgacgtcaccgagggccaaccaggacccagagtgtggaccttcctggcccatgac
cgggactcgggccccaatgggcaggtggagtacagcatcgtggacggagaccctctgggg
gagtttctgatctctcccgtggaaggggtgctgcgggtccggaaggatgtggagctggac
cgggagaccattgccttctacaacctgaccatctgtgctcgagacaggggggttcccccg
ctcagctccacgatgctggtggggatccgggtgctggacatcaacgacaacgaccccgtg
ctgctgaacctacccatgaacatcaccatcagtgagaacatccccgtctccagcttcgtc
acccgtatcctggccagcgacgctgacagcgggtgcaacgccctcctcaccttcaacatc
actgcaggcaaccgagagcgggccttctccatcaacgccacgacagggatcgtcactgtg
aaccggcccctggaccgcgagcggatcccggaatacaagctgaccatttccgtgaaggac
aacccagagaatccacgcatagccaggagggattttgactttctgctgatctttcttgcg
gatgagaacgacaaccaccccctctttactgagagcacctacctggcggaggtgatggag
aattctcctgctgggaccccgctgacggtgctcaatgggcccatcctggccctggatgca
gacctggatgtctacgccgtggtgacctaccagctgctgggtgcccagagcgggctcttt
gatattgacaacagcaccggcgtggtgacagtgaggtcaggtgtcaccattgaccgggag
gccttctcacctgccgtcctggagctactgctgctggctgaggacattgggctgctcaac
ggcacagccgacctgatcgtcaccatcctggatgacaatgacaactggcccacctttagc
cctgccgccctcaccgtccatctgctggagaactgcccaccaggattctcagtccttcag
gtcacagccacggatgaggacagtggcctcaatgcggagctcatctaccgaatagaagct
ggggctcaggaccgcttcaccatccacccagtgactggtgtcatacgtgtcggcaatgtc
accattgacagggaggagcaggaatcctataggctgacagtggtggccaccgaccggggc
accatccctctctcgggcacagccatcatcactatccttatcgatgacatcaatgactcc
cgccctgagttcctcaaccccatccagacggtgagcgtgctggagtcagctgagccaggc
acggtcattgccaacgtcaccgccatcgaccgtgacctcaaccctaagctggagtaccac
atcatcagcatcgtggccaaggatgacactgaccgcctggtgcccgaccaggaggacgcc
tttgccgtgaatatcaacacagggtctgtaatggtgaaatcccccctgaaccgggaactg
gttgccacctatgaggtcactctctcagtgactgacaaagccagcgacctaccagagctc
tccgtcagtgtgccaaatgccaagctgacggtcaacatcctggatgtcaatgacaacacg
ccccaattcaagcccttcgggatcacctactacacggagaggatcctggagggggccacc
ccaggcaccacgctcatcgctgtggcagctgtggaccccgacaagggcctcaatgggttg
atcacctacagcctgctggacctgatacccccgggctatgtccagctggaagactcctca
gcaggcaaggtcattgccaatcggacggtggactatgaggaagtgcactggctcaacttt
accgtgagggcctcagacaatgggtccccaccccgggcagctgagattcctgtctacctg
gagattgtggacatcaatgacaacaaccccatctttgaccaactctcctaccagggagcc
atctttgaggatgttcctgtgggcacagtcatcctgagagtcactgctactgatgccgac
tcaggcaacttcgccctcattgagtacagccttgtggacggcgagggcaagtttgctatc
aaccccaacacaggtgacatctatgttctgtcctctctggaccgggaggagaaggctcac
tacatcctgactgccttggccaaagataaccctggagatgtagccagcaaccgtcgagaa
aattcggtgcaggtggtaatccaggtgttggacatcaatgactgccggccacagttctcc
aagccccagttcagcacgagcgtgtatgagaatgagccagcgggcacctccgtcatcacc
atgatggccaccgaccaggatgagggctccaatgcggagctggcctactccctcgagggc
ccgggcgtggaggccttccacgtggacatggactcgggcctggtgaccacaaagcggcca
ctgaagtcctacgagaggttcaacctcaccgtggtggccacggatggcggacagccccca
ctctggggcaccgccatgctcctggtggaggtcatcgacgtcaacgacaaccgccccgtc
ttcgtgcgcccacccaatggcaccatcctccacatcaaagaggagatcccactgcgctcc
aacgtgtacgaggtctacgccacagacgaggacgagggcctcaatggggccgtgcgctac
agcttcctgaagacaacaggcaaccgggactgggagtacttcaccatcgacccagtcagt
gggctcatccagaccgcgcagcgcctggacagagagaagcaggcagtgtacagcctcatc
ctggtggccagcgacttgggccagccggtgccttatgagactatgcagccactgcaggtg
gccctggaggacatcgatgacaacgaacccctcttcgtgaggcctccgaaaggcagcccc
cagtaccagttgatgacagttcccgagcactcaccacgtggcaccctcgtgggcaacgtg
acaggcgctgtggacgcagacgagggccccaacgccatcgtgtactacttcatcgcagcc
ggcgacgaagagaagaacttccagctacagcccgacgggcgtctgctggtgctgcgggac
ctggacagggagcgcgaagccgtcttctccttcatcgtcaaggcctcaagcaatcgcagc
tggacacctccccgtgggcactccccagccctggacctggccactgacctcaccctgcag
gaagtgcgtgtcgtgctggaggacatcaacgaccagcccccgcgcttcaccaaggctgag
tacactgcaggggtggccaccgacgctaaaatgggctcagagttgatccaagtgctggcc
ctggatgcagatattggcaacaacagcctcgtcttctacagcatcctggccatccactac
ttccgggcctttgccaatgactctgaggatgtgggccaggtcttcacgatggggagtgtg
gatggcatcctgcgcaccttcgacctcttcatggcctacagccctggctactttgtagtg
gacattgtggcccgagacctggcaggtcacaatgacacagccatcattggcatctacatc
ctgagggatgaccagcgggtcaagatcgtcattaatgagatccccgaccgtgtgcgtggc
ttcgaggaggagttcatccgcctgctctccaacatcactggtgccatcgtcaacaccgat
gacgtgcagttccacgtggacacgaagggtcgggtgaactttgcacagacagagctgctt
atccacgtggtgaaccgcgaaaccaaccgtatcctggacgtggacagagtgatccagatg
atcgatgaaaacaaggagcagctgaggaatctattccggaactacaacgtcctagacgtg
cagcccgccatctctgtccagctgcccgaagacatgtccgccctgcagatggcgaccatc
gtcctggcccttctcctcttcctggctgccatgctcttcatcctcatgaactggtactac
aggaccgtacacaagaggaagctcaaagccatcgtggctggctcggcagggaatcgcggc
ttcgttgacatcatggacatgcccaacaccaacaagtattcctttgacggggccaacccc
gtgtggctggatcctttctgccggaacctggagctggctgcccaggcagagcacgaggat
gacctgccggagaacctgagtgagatcgccgacctgtggagcagccctacccgcacccac
ggaacttttgggcgtgaaccagcagcagtcaagcctgatgatgaccggtacctgcgggcg
gccatccaggagtatgacaacattgccaagctgggccagatcattcgggaggggcccatc
aagggctcgctgctgaaggtggtcctggaggattacctgcggctcaaaaagctctttgca
cagcggatggtgcaaaaagcctcctgccactcctccatctccgagctgatccagactgag
ctggaagaggagccaggggagcgcagccccggccagggcagcctgcacttctgccacaag
ccacctacggagctcaaagggccagacgggatccacgtgacgcacggcagcaccggcacg
ctgctggctaccgacctcaacagcctgcccgaggatgaccagaagggcctgggccgctca
ctggagacgctgaccgccgccgaggccagcgccttcgagcgcaacgcccgcaccgagtcc
gccaaatccacgcccctgcacaagcttcgcgacgtgatcgtggagagccccctggagatc
acagagctgtga
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integrated database retrieval system
