Phocoena sinus (vaquita): 116756484
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Entry
116756484 CDS
T07759
Symbol
USP40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40 isoform X1
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psiu01002
]
116756484 (USP40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116756484 (USP40)
Enzymes [BR:
psiu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
116756484 (USP40)
Peptidases and inhibitors [BR:
psiu01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
116756484 (USP40)
Ubiquitin system [BR:
psiu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
116756484 (USP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
DUF4694
DUF4828
Motif
Other DBs
NCBI-GeneID:
116756484
NCBI-ProteinID:
XP_032492766
Ensembl:
ENSPSNG00000003975
LinkDB
All DBs
Position
7:6551473..6643708
Genome browser
AA seq
1284 aa
AA seq
DB search
MFSFTMFGDLFEEDYSSMSNDHYGKGKKLKTKALEPPAPREFTNLSGIRNQGGTCYLNSL
LQTLHFTPEFREALFSLGPEELGSLEDKDKPDAKVRIIPLQLQRLFAQLLLLDQEAASTA
DLTDSFGWTSDEEMRQHDVQELNRILFSALETSLVGTSGHDLINRLYHGTIVNQIVCKEC
KNVSEKQEDFLDLTVAVRNVSGLEDALWNMYVEEEVFDYDNLYHCGTCDRLVKAAKSAKL
RKLPPFLTFSLLRFNFDFVKCERYKETSCYTFPLRINLKPFCEQSELDDLEYMYDLFSVI
IHKGGCYGGHYHVYIKDVDHLGNWQFQEDKSNPDVNLEDLQNEEEIDDPLMILKAVLLQE
ESNLISVDQLGQKLLKKIGISWNKKYRKQYGPLRKFLQLHSQIFLLSSDESTVSLLKDSS
LQAESDIRRNDQQLLKTLTSEPPGLNDRPSCPHWFDINDSKVQPIKEKDIEQQFQGKESA
YMLFYRKSQLQRPPEAQANPRYRVPCHLLNEMDAANIELQIQRAECDSTNNNFELRLHLG
PHYHFFNGALHPVVSQTESMWDLTFDKRKTLGDLRQSIFQLLEFWEGDMVLSVAKFVPAG
LHVYQTLDGDHLTLCEIEIADGEDIFVWNGVEVGGIQIPAGSDCEPLLLNVLHPATSSEE
EQCQQLIDSPYVFPSNAEIGSVFTACAIPDGVILVNSAESVGEESWTTIPKEDLKKTFRE
QGLRNGSSLLIQSSNDGDSLLTKRGKWITSVNEVDWLQVKNLCQLDSEEEQVKISATLNT
VVFDIRIKAIKELKLMKELAEDSCLRPIDRNGKLLCPVPDNYTLKEAELKMGSSLGLCPG
KAPTSSQLFLFFAVGSDVQPGTEMEIIVEETISVRDCLKVMLEKSGLSGDAWHLRKMDWC
YEAGEALCEEDAALKELMLSSGDTLLLIEGKLPPLGFLKVPIWWYQPRGPLHHWKSHQDQ
TNCTFSQGGVWRANSIQDPRGREAGLESGPHAAPVLTAAATQELLQGRSSSLTSEKTHRQ
DAPSDVHAEVSLRYLGDVEISEDATLGELKSQAMTLPSFLEFSIPSPAFLRAWTVESRRP
GRLLRVHCQRLREYKLGQRTEICLEPLQKEENLGPQHVLLRTQMRLPGKRAYALPVDLVW
DTARGWTAGSLRHQVADFYSLPVEKIEIAKYLPEKFEWLPVPSWNQQITKRKKKKKQDNL
QGAPYHLKDGDTIGIKNLLADDDDDFSTVRDDIGREKQKAFALGKNKSQEALRVRSGDVP
SGAETPARPRGPEASLSIHVGSFR
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtttcacaatgtttggggacctgtttgaagaggattattccagtatgtcaaat
gatcattatggaaaagggaagaaattaaagaccaaagctttggagccaccagcgcctagg
gaattcaccaatttaagtggaatcagaaatcagggtggaacctgttacctcaactccctt
cttcagactcttcatttcacacctgaattcagagaagctttattttctcttggcccggaa
gagcttggttcgttagaggataaggataaacctgacgcaaaggtccgaatcatacctttg
cagttacagcggttgtttgcacagcttctgctcttagaccaggaagctgcgtccaccgca
gacctcactgacagctttgggtggaccagtgatgaggaaatgaggcaacatgatgtacag
gaactgaatcgaattctctttagtgctttggaaacttctttagttgggacctccggccat
gacctcatcaatcgtctatatcacggaaccattgttaaccagattgtttgtaaagaatgt
aagaatgtcagtgaaaagcaggaagacttcttagatctcacagtagcggtcagaaatgta
tcaggtttggaagatgcactctggaacatgtatgtggaagaggaagtttttgactacgac
aacttgtaccactgtgggacttgtgacaggctggttaaagcagcaaagtcggccaaattg
cgtaagctgcctccctttcttactttttcattattaagatttaattttgattttgtgaag
tgtgaacgatacaaggaaacaagctgttatacgttccctctccggatcaatctcaagcca
ttttgtgaacagagtgaattagatgacttggaatatatgtatgacctcttctcagttatt
atacacaaaggtggttgctacggaggccattatcatgtgtatattaaagatgtagatcat
ttgggaaactggcagtttcaagaggacaaaagtaatccagatgtgaatttggaagatctt
caaaatgaagaagagattgatgatccattgatgattctaaaagcagtcttgttacaggag
gagagtaatctaatttctgttgatcagctgggccagaaactcttgaaaaagataggaata
tcttggaataagaagtacagaaaacagtatggaccactgcgaaagtttttacagcttcat
tctcagatatttctgctcagttcagatgaaagtacagttagtctgttgaaggactcttct
ctccaggctgagtctgatatacgaagaaatgatcaacaacttttgaagacacttacttca
gaacccccaggattaaatgatagaccctcctgtccccactggtttgatataaacgattcc
aaagtccagccaattaaggaaaaggatattgaacagcaatttcagggtaaagaaagtgcc
tacatgttgttttatcggaaatcccagttgcagagaccccctgaagctcaagctaaccca
agatacagggttccatgtcatttgctgaatgaaatggatgcagccaacattgaactacaa
atacaaagggcagagtgtgattctacaaacaataattttgaattgcgtctccacctcggc
cctcattatcatttcttcaatggggctctgcacccagtagtctctcaaacagaaagcatg
tgggatttgacctttgataaaagaaaaactttaggagatcttcggcaatcaatatttcag
ctgttagaattttgggaaggagatatggttcttagtgttgcaaagtttgtaccagcagga
cttcatgtttaccagacacttgatggagatcacctgacactgtgtgaaattgaaattgct
gatggggaagacatctttgtatggaatggggtggaggttggcggaatccagattccagct
ggtagtgactgtgaacctctgcttttaaatgttcttcatccggcgacaagcagtgaagaa
gagcagtgtcagcagttgatagactctccatatgtctttccatctaatgcagaaataggt
agtgtattcacagcctgtgcaatcccagacggagtcatcttagtcaacagtgctgagtct
gtaggtgaagagagctggaccaccattcccaaggaagacttgaagaagaccttcagagag
caaggtctcagaaatggaagctcacttttaattcagagttctaatgatggtgacagtttg
ttgaccaaacgagggaagtggatcaccagtgtgaatgaggttgactggctccaagttaaa
aatttatgccaattagactctgaagaagaacaagttaaaatatcagcaactcttaacaca
gtggtgtttgatattcgaattaaagccataaaggaattaaaattaatgaaggaactagcc
gaggacagctgtttgaggcctattgatagaaacgggaagcttctttgtccagtgccagac
aattatactttgaaggaagcagaattgaagatggggagttcattgggactgtgtcctgga
aaagcaccaacttcttctcagctgttcctgtttttcgctgtggggagcgatgttcagcct
gggacagagatggagatcatagtagaagaaacaatatctgtgagagattgtttaaaggta
atgctggagaaatctggcctctcaggagacgcatggcatttacgaaaaatggattggtgc
tatgaagctggggaggctttatgtgaagaagatgcagcactgaaagagcttatgctctct
tctggagacactttgcttttaattgaaggaaaacttcctcctctgggtttcctgaaggtg
cccatctggtggtaccagccacggggtcccttgcatcactggaagagtcatcaggaccag
acaaactgtaccttttctcaaggcggggtctggagagctaattccatccaagacccaagg
ggcagagaggcagggttggagtccggaccccacgcagctcctgttcttactgctgccgcc
acccaggagctccttcaagggcgttccagttcactgacttctgagaagactcacagacag
gatgctcccagtgacgtgcatgcagaagtttccctccgctacttgggagacgttgaaatc
tcagaagatgctacgttgggggagctgaagtctcaggccatgaccttgccctccttcttg
gagttttccatcccatcgcctgccttccttagagcctggacggtggaaagtaggcgcccc
ggcaggctcttaagagtccactgtcagcggctcagggaatataaattgggacagagaact
gagatctgcttagagccccttcagaaagaagaaaacttgggcccccagcacgtgctgctg
aggacacagatgcgcctccctggcaagagggcgtatgccttgcccgtggacttggtgtgg
gacactgcccgaggctggacggccggctccctgaggcaccaagtggccgatttctattct
cttcctgtggagaaaattgaaattgccaaataccttcctgaaaagtttgagtggcttcca
gtacctagctggaaccagcaaattaccaagaggaaaaagaagaaaaagcaagataatttg
cagggggcgccttatcacttgaaagatggagatactattggcattaagaatctcctggct
gacgatgatgatgatttcagcacagtcagagatgacattggaagagaaaaacagaaagcg
tttgctctggggaaaaacaagagccaggaagcccttcgtgtgcggagtggcgacgtcccc
tctggtgcagagacgcctgcccgcccccgtggaccagaagcttctctctccatccacgtc
gggagcttcagatag
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integrated database retrieval system
