Phocoena sinus (vaquita): 116762858 Help Entry 116762858         CDS       T07759                                  Symbol SKIV2L Name (RefSeq) helicase SKI2W isoform X1   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism psiu  Phocoena sinus (vaquita) Pathway psiu03018   RNA degradation Brite KEGG Orthology (KO) [BR:psiu00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     116762858 (SKIV2L)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:psiu03019]     116762858 (SKIV2L) Enzymes [BR:psiu01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      116762858 (SKIV2L) Messenger RNA biogenesis [BR:psiu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      116762858 (SKIV2L)   mRNA degradation factors    3'-5' decay     Ski complex      116762858 (SKIV2L) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C ResIII DUF3516 Motif Other DBs NCBI-GeneID:  116762858 NCBI-ProteinID:  XP_032506229 Ensembl:  ENSPSNG00000022137 LinkDB All DBs Position 11:complement(80411921..80421938) Genome browser AA seq 1247 aa AA seqDB search MMETERIVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE KDLLTVPPGFKKGVDFAPEDHPAPAPGLLSLSRLLEPLDLGGGDEDESGEAVGQPGGPRR DTVSASPCSAPLARASSLENLVLQEASTAVAPPEPPKPPPQEQWAIPVDVTSPVDDFYRL IPQPAFRWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT SPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEW VIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIS TVARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFHTKGYYAAVEARKERMSKHAQTFGAK QPTHQGGSAQDRGVYLCLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSE IHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVL FATETFAMGVNMPARTVVFDSTRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC KGRVPEMADLHRMTMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDS KAHEQTLAELTKRLGALEEPDVTGQLADLPEYYSYGEELTETRSLIQRRIIESVNGLKSL SAGRVVIVKSQKHHNALGVILQVSSSSTSRVFTTLVLCDKPTSEDPQERGPASPSVPYPD DLVGFKLFLPEGPCGHTVAKLQPGDVAAITTKVLRLNGEKILEDFSKRQQPKFKKEPPSA AATAAVQELLRLAQAHPAGPPTLDPVNDLQLKDVSVVEAGLRVRKLEELIRGAQCVHSPR FPAQYLKLRGRMQIQEEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGR VACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPSDQLPSTLKQGVERVR AVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRC IQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ NT seq 3744 nt NT seq  +upstreamnt  +downstreamnt atgatggagacggagcgaatcgtgctacctcccccagatcctctggacctgccccttcgg gccgtagagctgggatgcacagggcgttgggagctgctgaatgtgcctggggctccagag agcacccttccccacggcctccctccctgtgccccagatctgcagcaagaagcagagcag ttgtttctgtcatctcccgcctggctgcctctgcacggtgtggaacactcagcccgaaaa tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg ctagagaatacaaacctgtcggccacgacctccttgtctcttcgccggccacctgggccc atctcccagtccctgtgggggaatccaacacagtacccattctggccagggggaatggat gagcccaccataacagatctgagcactcgagaggaggctgaggaggagatagactttgag aaagatcttcttactgtcccacctggcttcaagaaaggtgtggactttgcaccagaggat cacccggctccagctcccggcctgctcagcctcagccgtctgctggagcccctggatttg ggtgggggcgatgaggatgagagtggtgaggcagtgggacagccaggcggtcccagacgg gacactgtttcagcctctccctgcagtgctcccctggcccgagcaagcagcttggagaac ctagtgttgcaggaagcgtccacagctgtagctcccccagagcctcccaagcccccccct caggagcagtgggccattcctgtggatgtcacctcccctgtcgatgatttctaccgactc attccccagccagccttccggtgggcgtttgagccagatgtgtttcagaaacaggccatc ctacacttggaacggcatgactcggtctttgttgcagctcacacgtccgcagggaagacg gttgtggctgaatacgccattgcccttgcccagaaacacatgacgcgcaccatctatact tcgcccatcaaggctctgagcaaccagaagttccgggacttccgaaacacatttggggat gtgggacttctcaccggggacgtgcagctgcacccagaggcctcttgcctcattatgaca acagagatccttcgctccatgctgtacagtggctcggatgtcatccgagacctggagtgg gtcatctttgatgaggttcactacatcaacgatgctgagcgcggagtcgtgtgggaggag gtgctcatcatgcttcctgaccacgtctccatcatccttctgagtgctactgtccccaac gcccttgaatttgctgactggattgggaggctgaagcgtcgccagatctatgtgatcagc actgttgctcgcccagtccccctggagcattatctcttcacggggaacagccccaagacc cagggggagctcttcctgctgctggactcccgaggcaccttccacacaaaggggtactac gcggctgtggaggccaggaaggagcggatgagcaaacacgcccagacctttggggccaag cagcccacgcatcagggggggtctgcacaggaccgtggcgtgtacctgtgcctcctggcc tccctccgcacccgtgcgcagctgcccgtggtggtgttcaccttctcccgtggccgctgt gatgagcaggcctcgggcctcacctcccttgacctcaccacgagttcagagaagagtgag attcacctcttcctgcagcgctgcctcgctcgcctccgaggctctgaccgccagctgccg caggttctgcacatgtctgaactcctgcaccgcggcctgggtgtgcaccacagcggcatc ctgcccatcctcaaggagatcgtggagatgcttttcagccgtggcctggtcaaggtcttg tttgccacggagaccttcgccatgggtgtaaatatgccagcccggacagtggtatttgac tccacgcgtaagcacgatggctccaccttccgggacctgctccctggggagtatgtgcag atggcaggccgggcgggccggaggggcctggaccccacaggcaccgtcatcctgctctgc aagggccgcgtgcccgagatggcggacctgcaccgcatgacgatggggaagccgtcccag ctgcagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggacgcc ctccgggtggaggacatgatgaagaggagcttctctgagtttccatcccgcaaggacagt aaggcccatgaacagactctggctgagctgaccaagcggctgggggccttggaggagcct gatgtgactggccaactcgctgacctgcctgagtattacagctacggggaggaactgaca gagacccggagcctgatccagcgacgcatcatagagtctgtgaatgggctgaaatctctc tcagcgggaagggtggtgattgtgaagagtcagaagcatcacaacgccctgggtgtgatc cttcaggtctcctcgagctccaccagcagagtattcacgactctggtcttgtgtgataag cccacatctgaggacccgcaggagagggggccagcctcccccagtgtgccctacccagat gacctcgtgggattcaagctgttcctgcctgaagggccctgtggccacactgtggccaag ctccagccgggagatgtggctgccatcaccaccaaggtgctccggctgaatggggagaag atcttggaggacttcagcaagaggcagcaaccaaaattcaagaaggagcctccctctgcg gccgcgacagctgctgtccaggaactactacgtctggctcaggcccacccagcaggaccc cctacccttgaccctgtcaatgacctgcagctcaaggatgtgtcggtggtagaggcgggg ctccgggtccggaagctggaggagctgatccggggggctcagtgtgtacacagtccccgt ttccctgcccagtacctgaagctgcgggggcggatgcagatacaggaggagatggagcgg ctgcgcttcctgctgtcggatcagtcgcttctgctgctccctgagtaccaccagcgagta gaggtgctccgaaccctggggtacgtagatgaagtgggcaccgtgaagctggcagggcgg gtggcttgtgccatgagcagccatgagctgctcctcactgaactcatgtttgacaacgcg ctgagtgcccttcggcccgaggagatcgcggccctgctctccggcctggtctgccagagc cccggggaccctagtgatcagctcccaagcacccttaaacagggggtggaacgtgtccgg gctgtggccaagcggatcggtgaggtgcaggtggcctgtggcttgaaccagacagtggag gaatttgtgggagagctgaattttggcctggtcgaggttgtgtacgagtgggcccggggc atgcccttctctgagttggcagggctctcggggacccccgagggcctggtggtccgctgc atccaacgcctggccgagatgtgtcgttcgcttcggggggcggcccgcctggtgggcgag cctgtgctaggtgccaagatggagacggcagccaccctgctacggagggacatcgtcttt gcagccagcctctacacccagtga

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