Phocoena sinus (vaquita): 116763451
Help
Entry
116763451 CDS
T07759
Symbol
FNDC1
Name
(RefSeq) fibronectin type III domain-containing protein 1 isoform X1
KO
K24484
fibronectin type III domain-containing protein 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
116763451 (FNDC1)
Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
116763451 (FNDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TARSH_C
fn3
Pur_ac_phosph_N
Interfer-bind
CRLF2-like_D2
Tissue_fac
Motif
Other DBs
NCBI-GeneID:
116763451
NCBI-ProteinID:
XP_032507076
Ensembl:
ENSPSNG00000018682
LinkDB
All DBs
Position
12:complement(8257648..8356426)
Genome browser
AA seq
1869 aa
AA seq
DB search
MAPEVGASPRARLPLPWAALLFLAALLPVVSSAGAPADHPLKPRHVKLLSTKMGLKVTWD
PPKDATSRPVEHYNIAYGKSLKSLKYIKVNTETHSFLIEDVEPGVVYFVLVTAENNSGVS
RPVYRAESLPGGEWIKIDGFPIKGPGPFNETVTEKDVPNKPLRVRVRSSNDQLSVAWKAP
HLSGAKSPRRSRGFLLGYGESGRKMNYVPLTRDERTHEIKKLASESVYVVSLQSLNSRGQ
SPPVYRAALTKRKISEEDELDVPEDINVRVISSQSVLVAWVDPVLEKQKKVVTSRQYTVR
YREKGESARWDYKQVSNRRVLIENLIPDTMYEFAVRISQGERDGKWSTSVFQRTPESAPT
TAPENLTVWPVNGKPTAVTVAWDALPETEGKVKEYILSYAPALKPFGAKSLTYPGETTSA
LVDGLQPGERYLFKIRAANRRGLGPHSKAFIVALPATPTSESDVQQKADTEDPHKAEKPE
PSSSSPKAPASSKHTRLPVSPQERNVKNLLLDLKNKILANGGLPRKPQLPPRKSEGVDLQ
STEITEEEVLDSRGHPPTSPSETQGQKPHQRPPSRPVHPVLPAGRVPGRARTPGLPRKDG
ADKRGSSPASHPRPGAPPSASSVPATPPEGPAHRPSSSDDNDSVGQEEEGPAAGSPQPPP
RSAAHARPALTPGRHPAWGALRDGGSVNHSAKPALPAQRAPHSEDGEETSRASAPPARLS
PSHRGPSRLLPTQPQPGPPLSRGWKDGHDAPAAKSTALLQATQPSSVSSRLSSRTQASEG
ADDLDGGGDNDAEEKGKQAKATAPTFWSRAPVSGHFSALRNRPFAFPGRYPHRLGGGRGP
RLRPSSSPPSTVAPRVHSRVNSHPASDHRRGLGGHEDSEEEAGDEQPLPATVANDHASSS
SGQPVSRGADHLRRGPQRAASPQRKEPLEENPKSAGTWAGAHPQAKSPPSKAQDVQQSTD
AGVEGGSSQTQLSPAPRSQHHRGTRVPRRMGAGSAAPEKQPSSAVSASQQQPRGPQSKEE
GRPHPTSQESASFSDPYSSRGRQSSLTASSQGGLPTSPQNQSEDSDDSAEAETRAIRAPA
YSAAAKVATPSLPKHRQVEAQARSAGDSHLRRPLGRPGSLHPQARPRVPGRAGPQAVGKK
DGASQATPSKREPLPSKWQQSVSAEEEDEDMMFFNGGKDKDPLSSSVPKWPSSFIPRGGK
HVDGNIAKGETEPAIVLAPPRVSSPQDKNATPVKRPLPPPPGSSPRATHLPPRHPPRSPA
TPSPTEAAPSPPRFTTRAPASYSSTTPMLSLRQRMMNSRFRNPFSRPPVRPPSRQGYNGR
PNAEGRVLPGSNGKPSGQRIINGPQGTKWVVDLDRGLVLNGEGRHLQDSQGNPLRVKLGG
DGRTIVDLGGTPVVSPDGLPLFGQGRYGKPLASPQDKPILSLGGKPLVGLGVVKTTTSAS
TASTRPPTATPPQPTTTSTTRPATTRTTTRSTTTTTAPEPAARIPTCRPGTLERHDEDGN
LVVGSDGIPECHPEEDEFSGLETDTAVPTEEAYVIYDEDYEVETSRLPATTKPSTPAATP
AVIPPEGSIRSYPEEEFDLAGKKRFVAPYVTYLNKDPSAPCSLTDALDHFQVDSLDEIIP
NDLKKSDLPPQHAPRNITVVAVEGCHSFVIVDWDKSAPGDMITGYLVYSASYEDFIRNKW
STQASSVTHLPIENLKPNTRYYFKVQAKNPHGYGPISPSVSFVTESDNPLLVVRPPGGEP
IWIPFAFKHDPGYTDCHGRQYVKRTWYRKFVGVVLCNSLRYKIYLSDNLKDTFYSIGDSW
GRGEDHCQFVDSHLDGRTGPQSYIEALPTTQGYYRQYRQEPVSFGNIGFGTPYYYVGWYE
CGVSIPGKW
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgaggtcggggcgtccccgcgggctcggctcccgctgccctgggcggcgctg
ctgttcctggccgcgctgctgccagtcgtctcctcggcgggggctccagctgaccaccca
ctgaagccaaggcatgtgaaactgctgtccactaaaatgggcctgaaagtcacgtgggac
ccacccaaagatgctaccagtagacccgtggagcattacaacattgcctatgggaagtca
ctgaaaagtcttaaatacatcaaggtgaatacggagacacactccttccttattgaggat
gtggagccgggggtagtgtactttgtgctggttactgcagaaaacaacagtggagtgagc
cgtccagtttacagagctgagagcctgcctggaggtgaatggatcaagattgatggtttt
cccattaagggtccaggaccatttaatgaaaccgtcacagaaaaggacgtgcccaacaag
cccttgcgggtccgagtccgctcctccaacgaccagctgtccgtggcgtggaaggcgcct
cacctgtctggagctaagagtccacgcagatcacggggcttccttctgggctatggagaa
agtggccggaagatgaattatgttccactgacgagggatgagcgaacacacgaaattaaa
aagctagcctccgagtcagtgtacgtggtctcactgcagtccctgaactcccgggggcag
agtccgcccgtgtacagggctgcactaacaaagcggaagatttcagaagaggatgaactg
gatgtacctgaagacatcaatgtccgggtaatatcgtcccaatctgtgctggtagcctgg
gtggatcctgttttggaaaaacagaagaaagttgttacatcaagacagtacactgtgcgc
taccgagaaaagggggagtccgccaggtgggattacaagcaggtctccaacagacgagtg
ctgatagagaacctgattccagacaccatgtatgaatttgcagtccgcatctcacagggt
gaacgagatggcaaatggagtacatctgtcttccagagaacaccagaatctgctcctacc
acagctcctgaaaatttaaccgtctggccagtcaatggcaaacctacggctgtcacggta
gcttgggatgcactgcctgagaccgaggggaaagtgaaagaatacattctttcatacgcc
ccggctctcaaaccatttggagcaaagtccctcacctatcctggagagactacttctgcc
ctagtggatggtctgcagcctggggaacgctatcttttcaaaatccgggccgcaaacagg
agaggattggggcctcattccaaagccttcattgtcgctctaccagcaacccctaccagt
gagtctgatgttcagcagaaagcagacacggaagatcctcacaaggctgaaaagcccgag
ccgtcctcatcttcgcccaaagctccagcttcctcaaaacacactcgtttgcctgtttct
ccccaagagagaaacgtcaagaacctgcttcttgacttgaagaacaaaatattggctaat
ggtgggctgcccagaaaaccccagcttccccctcggaagagtgaaggggtggatcttcag
tcgacagaaatcaccgaggaggaagtgctggattcccgagggcacccgccaacctcgccc
tcggagacccaaggccagaagccccatcagaggccaccaagtagacctgtccacccggtc
ctccctgcggggcgggttcccgggagagcccgaacgccggggctgccccggaaggacggc
gcggacaagcgtggctcgtcgcccgcctctcaccctcgcccaggggcgcccccctccgcc
tcttctgtcccagccacaccccctgagggccccgctcaccgcccttccagctctgatgac
aatgactccgtgggccaagaggaggaaggaccagccgcaggctccccgcagccgcctccc
cggagcgcagcgcacgcccggcccgccctgacgcccggccggcacccagcctggggcgcc
ctgcgcgacggaggctccgtgaaccacagcgccaaaccggccttgcccgctcagagggcg
ccccactctgaagatggggaggaaacttccagggcttcagccccacccgcgagactgtct
ccatcccacagggggccatctcggctgctgcccacccaaccacagcccggacccccgctc
tccaggggctggaaggatggtcacgatgccccagccgccaagtccaccgcgctgttacag
gctacccagccctcctcggtctcctctcgtctctcctcaaggacacaagcctctgaaggc
gcagatgacttggacggcggcggtgacaatgatgctgaagagaaagggaagcaggctaaa
gccacggccccgacattttggtcccgggcgcctgtctctggacatttcagtgcgctcagg
aacaggccctttgctttccccggcagatatccacacaggcttggcggtggccgaggaccc
cggttacggccctccagctccccgccgtccaccgtggccccccgggttcactcgagggtg
aattctcacccagcttctgaccacaggcgaggcttgggcggccatgaagacagcgaagaa
gaggcaggggacgaacagccactcccggccaccgtggcgaatgaccacgcgtcttcctcc
tccgggcagcctgtctcccggggcgcggaccacctgagaagaggcccccagagagcggcg
agcccgcagcggaaggagcccctcgaagagaaccccaagtccgcggggacctgggcaggg
gcgcatcctcaggccaaatctccgccctctaaggcgcaggatgttcaacagagcaccgac
gcgggcgtggagggcggctcttcccaaacgcagctgtctcctgcgcctcgctcgcagcac
caccgcgggacccgcgtgccccgaaggatgggtgccgggtccgccgctccggaaaagcag
ccttcatcggccgtctccgcgtcccagcagcagccccgcggcccgcagagcaaggaagag
gggcgtccccaccccacgtcgcaggaaagcgcctccttctcagacccttactcgtccaga
ggcaggcagtcctccctcacggcgagctcccagggggggctccccacgtctccccagaat
cagagcgaggattccgacgacagcgcagaagcggagaccagggccatccgggcgcccgca
tactcggcggctgccaaggtcgccaccccgtcccttcccaagcaccgccaggtggaggct
caggcaagaagcgccggcgacagtcacctccgcagacccttaggcaggcccggcagcctc
cacccccaagcccgccccagggtccccggcagagcagggccccaggcggtggggaagaag
gacggtgcgtcccaggccacgccatccaaaagggagcccctgccgtcaaaatggcagcag
tcggtctcggccgaggaggaagatgaagacatgatgttttttaacggaggaaaggacaag
gacccactgtcttcctctgttccaaagtggccctcctccttcatccccaggggcggcaag
cacgtggatgggaacatcgcgaagggggagacagagcctgctatcgtgcttgcgcctccc
agagtgagctccccgcaggacaagaacgccaccccagtgaagcgtcctcttcctccacct
ccgggcagctccccgagagccacgcacctcccgcccagacacccccctcgcagccctgcc
accccaagtcccacggaggccgccccctccccgccgcgcttcaccacgcgcgcccctgcc
agctactcgtccaccacccctatgctctccttgcggcagcgcatgatgaactcaagattc
cggaaccctttctcacgcccgcctgtgagacccccttccagacaaggttataatggaaga
ccaaacgcagaagggagagtacttcctggtagtaatggaaaaccaagtggacaaagaatt
atcaatggccctcaaggaacaaagtgggttgtggatcttgatcgtgggttagtattgaac
ggagaaggaaggcacctccaagattcacaaggaaatccccttcgagttaaactaggagga
gatggtcgaaccattgtggatctgggagggacccccgtggtgagccccgatggcctcccc
ctctttgggcaggggcggtatggcaaaccgttggccagtccccaggataagcccattttg
agcctcggagggaagcccctggtgggcttgggggtcgtcaagacaaccaccagtgcctcc
accgccagcacgcgacccccgaccgccacgccccctcagcccaccacgaccagcaccacg
cgcccagcgaccacccgaaccactacgcggtcaaccaccactaccaccgcccccgagccc
gccgctcgcatccccacctgtcgccctgggaccctggagcgacatgacgaggatggcaac
ctcgtcgtgggctcagatgggatcccggagtgccaccccgaggaagatgagttctcagga
ttggagaccgacacggcagtgcccacggaagaggcgtacgtgatctatgatgaagattat
gaagttgagacctcaaggctgccggccaccaccaagccctccacccctgccgccactcct
gctgtcatccccccggaaggctccatcaggtcctaccctgaagaagagttcgatctggct
ggaaagaaacgatttgttgctccttatgtgacgtacctaaataaagacccgtctgcccca
tgctctctgactgatgctctggatcacttccaagtggacagcctggatgagatcattcca
aacgacctgaagaagagtgacctgcctcctcagcatgccccccgcaacatcactgtggtt
gccgtggaaggctgccactcatttgtcattgtggactgggacaaatccgccccgggagat
atgataacaggttacctggtctacagtgcatcctacgaagacttcatcaggaacaagtgg
tccacccaggcttcatcagtcacgcacctgcccatcgagaacctgaagccaaacacaagg
tattattttaaagttcaagccaaaaatcctcacggctatggacctatcagcccttcggtc
tcatttgtcacagaatcagataatcctttgcttgtcgtgaggccaccaggtggtgagccc
atctggatcccatttgctttcaaacatgaccctggctacacggactgccacggccgacag
tatgtgaagcggacgtggtacagaaagtttgtgggagtcgttctttgtaattcactgcgg
tataagatctacctcagtgataacctgaaagatacattctacagcattggcgacagttgg
ggaagaggtgaagaccattgtcaatttgtggattcacacctggatggaagaacagggcct
cagtcctacatagaagccctccctaccactcaaggctactatcgccagtaccgccaggag
ccagtcagcttcggcaacataggttttggaaccccctattactacgtgggctggtacgag
tgtggggtttccatcccagggaagtggtaa
DBGET
integrated database retrieval system
