Pirellula staleyi: Psta_1620
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Entry
Psta_1620 CDS
T01147
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psl
Pirellula staleyi
Pathway
psl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psta_1620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psl03019
]
Psta_1620
03009 Ribosome biogenesis [BR:
psl03009
]
Psta_1620
Enzymes [BR:
psl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Psta_1620
Messenger RNA biogenesis [BR:
psl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psta_1620
Ribosome biogenesis [BR:
psl03009
]
Prokaryotic type
rRNA helicases
Psta_1620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
ADB16295
UniProt:
D2QY81
LinkDB
All DBs
Position
complement(2034547..2035923)
Genome browser
AA seq
458 aa
AA seq
DB search
MTDLTGTDAPKPTFASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGT
GKTASFVIPILELLDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGK
PIKSQVDKLKKGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERI
LKRCPRERQTLLLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKF
DLLMKLLLREEPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRD
GSVRYLVATDVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDE
GHELTRIEERINKLLKRDEMRDFEPVGYGERSARAPAAPTQVISGKYMHGGNASGVAPTE
SATPSEGDSPAAEAAPAATEKRDSGLGKRGGKKYRRAL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
ttgacagatttgaccgggaccgacgctcccaagcccaccttcgcgtcgatggatctttcg
gatcagatgatggccgcgcttgaaaaagcgggctacgaatatcccacacccattcaagcc
ggactcattccccgcgctctcgaaggggtggatgttgtcggtcaggcgcgcacgggaacc
ggcaagacagcctcgtttgtcatcccgatcctggaactcctcgacatcgaacgtggagcg
ccaacgccacaagcactcattctcgttccgacgcgcgaactcgctgtgcaggtgcgcgat
gaagtggtcaagctttccgaaggtctcaaaatcaattgcgccgccgtctacggtggtaag
ccgatcaagagccaagtcgataagctgaaaaaaggttgccacgtcgtggtcggcacccca
ggacgcgtgctcgatcacatcgctcgcggaacgatcgacttcacccacatcgaatgcgtg
gtgctcgatgaagccgaccggatgctcgacatcggatttcgtcccgatattgaacggatc
ctgaagcgctgcccacgcgagcgtcaaacgctactcctctcggccaccgtgccaccgccg
atcgcgaaactcgcgcagcggtatatgtacgagcccgagatgctcaacttctcccccgct
gatgtttcggtcgacacgatcgagcagaagtatttcaccgtcgaacacgatcgcaagttc
gatctgctgatgaaactgctccttcgcgaagagcccaaacaggcgattgtcttctgccgt
accaagcgggggaccgacaaggtctatcagaagctgaccaagaagctgggcaacaccgct
gcgattcacggcgacctttcccaaggtcaacgcgatcgggtgatggccggattccgcgat
ggttcggttcgctacctcgtcgccaccgacgtgattggtcgtggtatcgacgtttccacc
gtctcgcatatcgtgaactttgatatccctgttttctgcgacgactacgttcaccgcgtg
ggtcgtacaggacgcatggggcgcgaaggggttgcctacacgtttgtttgtcccgatgaa
ggacacgaactcacgcgcattgaagagcgaatcaacaagctcctcaaacgcgacgaaatg
cgcgacttcgagccagtcggctacggcgaacgctcggctcgtgctccagccgctccgacc
caggtgatttcgggcaagtatatgcacggcggaaatgcctccggcgtggctcccaccgaa
tcggcaactccgagcgaaggtgactcgcccgctgctgaagccgctccagctgctaccgaa
aaacgggactccggactcggcaaacgaggcggcaaaaaatatcgccgagccctctag
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