Pseudomonas solani: PSm6_38980
Help
Entry
PSm6_38980 CDS
T09213
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psoa
Pseudomonas solani
Pathway
psoa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSm6_38980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psoa03400
]
PSm6_38980 (mfd)
Enzymes [BR:
psoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSm6_38980 (mfd)
DNA repair and recombination proteins [BR:
psoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSm6_38980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCD87491
LinkDB
All DBs
Position
complement(4260663..4264106)
Genome browser
AA seq
1147 aa
AA seq
DB search
MPESVLRLPSLPTAAGKQQWSNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQEL
SFFAPSLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPGLTHGVLVVPITTALHRLA
PTRFLLGSSLVLDVGQKLDVEQMRSRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDA
PFRIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLDKKAVTDFRGRFRERFDVD
FRRCPIYQDLASGITPAGIEYYLPLFFEESATLFDYLPADTQVFSLPGIEQAAEQFWNDV
RNRYEERRVDPERPLVPPAELFLPEEDCFARLKGSPRVVVSQEDQGTGVGRERFPARPLP
TLAIEAKASEPLAALRRFLEEFPGRVLFSAESAGRREVLLELLARLKLRPQEVGGWPEFV
SSKERLAITIAPLDEGLLLDDPGLALIAESPLFGQRVMQRRRRDRRGDGGDNVIKNLAEL
REGAPVVHIDHGVGRYLGLITLEIEGQAAEFLALQYAEEAKLYVPVASLHLIARYTGSDD
ALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPLADYATFSAGF
PFEETPDQQTAIEAVVADMLAPKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVEGAAQELAEGKVDIVIGTHKLLQDD
IKFKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIA
TPPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNEVKSIEKCAADLAELVPEAR
IGIGHGQMHERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYL
PDVHARLILYKRIASAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGIKK
VDAGPQGGRIEFAADTCVDPLVLIKLIQSQPKRYKFEGATLFRFQVPMERPEERFNTLEA
LFERLTP
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgagtccgtcctgcgtctcccgtccctgcccaccgctgctggcaagcagcagtgg
agcaatctccccggcgccgccctcagcctggcgatagccgaagctgccagcgcggccaaa
cgcttcaccctgctgctgaccgccgacagccagagcgccgagcgcctggaacaggagctg
agcttcttcgcgccgtccctgcccgtgctgcacttccccgactgggaaacgctgccctac
gacctgttctcgccgcaccaggacatcatctcccagcgcatcgccagcctctatcgcctg
ccagggctgacccacggcgtgctggtggtgcccatcaccaccgccctgcaccgcctggcc
ccgacgcgcttcctgctgggttcgagcctggtgctggacgttggccagaagctcgatgtc
gaacagatgcgcagccgcctggaggccgccggttaccgctgcgtggacaccgtctacgaa
cacggcgaattcgccgtgcgtggcgcgctgatcgacctgttccccatgggcagcgacgcg
cccttccgcatcgacctgttcgatgacgagatcgagaccctgcgcaccttcgacccggaa
acccagcgctcggtggacaaggtggagtcgatccgcctgctgccggcccgcgagttcccc
ctggacaagaaggccgtgaccgacttccgcggccgcttccgcgagcgcttcgacgtcgac
ttccgtcgttgccccatctaccaggacctggccagcggcatcaccccggccggcatcgag
tactacctgccgctgttcttcgaggaaagcgccaccctcttcgactacctgccggccgac
acccaggtgttttccctgcccggcatcgagcaggctgccgagcagttctggaacgatgtg
cgcaaccgctacgaagagcgccgcgtcgacccggaacgcccgctggtcccgcccgccgag
ctgttcctgccggaggaagactgcttcgcccgcctcaagggctcgccacgggtcgtggtc
agccaggaggaccagggcacaggcgtaggccgcgaacgcttccccgcccgcccactgccg
acactggccatcgaagccaaggccagcgagcccctggccgcgctgcgccgcttcctcgaa
gaattcccgggccgcgtgctgttcagtgccgagtccgccggccgccgcgaagtgctgctg
gaattactcgcccgcctcaagctgcgcccgcaggaagtcggcggctggccggaattcgtc
agcagcaaggaacgcctggccatcaccatcgcccccctcgacgaagggctgctgctggat
gacccgggcctggcgctgatcgccgaaagcccgctgttcggccagcgcgtgatgcagcgc
cgccgccgcgaccgtcgcggcgacggtggcgacaacgtcatcaagaacctcgccgaactg
cgtgaaggcgcgccggtggtgcatatcgaccacggcgtcggccgctacctggggttgatc
accctggagatagaaggccaggccgcggaattcctcgccctgcagtacgccgaggaagcc
aagctctacgtgccggtggccagcctgcacctgatcgcccgctacaccggcagcgacgac
gccctcgccccgctgcaccgcctgggctcggagacctggcagaaggccaagcgcaaggcc
gccgaacaggtgcgcgacgtcgccgccgagctgctggacatctacgcccgccgtgccgcc
cgcgaaggctatgcgttcaaggacccgctggccgactacgcgaccttctccgccggcttc
cccttcgaggaaacgccggaccagcagaccgccatcgaggccgtggtggccgacatgctc
gcgcccaagccgatggaccgcctggtatgcggcgacgtcggcttcggcaagaccgaagtc
gccatgcgcgccgccttcgtcgccgtgcacagcggcaagcaggtggccgtgctggtgccc
accaccctcctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccg
gtgacggtcgaggtaatgagccgcttcaaatcggccaaggaagtggaaggtgctgcgcag
gagctggccgagggcaaggtcgatatcgtcatcggcacccacaagctgctgcaggacgac
atcaagttcaagaatctgggcctggtcatcatcgacgaggagcaccgcttcggcgtgcgt
cagaaggaacagctcaaggccctgcgcagcgaggtggacatcctcaccctgaccgccacg
ccgatcccgcggaccctgaacatggccgtggccggcatgcgcgacctgtcgatcatcgcc
acgccgcccgcacgccgcctctcggtgcgcaccttcgtcatggagcagcagaacaccgtg
atcaaggaagccctgttgcgcgagctgctacggggcggccaggtctattacctgcacaac
gaagtgaagagcatcgagaaatgcgccgccgacctggcggagctggtgcccgaggcacgc
atcggcatcggccacgggcagatgcacgagcgcgaactcgaacaggtgatgagcgacttc
taccacaagcgctttaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
cccagcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccagctgcac
cagctgcgtggccgcgtcggccgtagccaccaccaggcctatgcctacctgctgacgccc
ccgcgcaagcagatgacgcccgacgccgagaagcgcctggaggccatcgccaatgcccag
gacctgggcgccggcttcgtcctcgccacccacgacctggagatccgcggtgccggcgag
ctgctcggcgacggccagagcgggcagatccaggcggtgggcttcaccctttatatggaa
atgctcgaacgcgcggtcaaggccatccgcaagggcgaacagccgaacctggaacagccg
ctgggtggcggcccggagatcaacctgcgcctgcccgcgctgatccccgaggactacctg
cccgacgtgcatgcgcgcctgatcctctacaagcgcatcgcctcggccgccgacgaggac
ggcctgaaggaactgcaggtggaaatgatcgaccgcttcggcctgctgcccgagccgacc
aagaacctggtgcgcctgaccctgctgaaactgcaggcggaaaagctcggcatcaagaaa
gtggacgccggcccgcaaggtggtcggatagaattcgccgccgacacctgcgtcgacccg
ctggtgctgatcaagctgatccagagccagcccaagcgctacaagttcgaaggggccacg
ctgttccgcttccaggtaccgatggagcgcccggaagaacgcttcaatacactcgaggcg
ctgttcgagcgcctgactccgtaa
DBGET
integrated database retrieval system
