Pseudomonas solani: PSm6_48470
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Entry
PSm6_48470 CDS
T09213
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psoa
Pseudomonas solani
Pathway
psoa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSm6_48470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psoa03400
]
PSm6_48470
Enzymes [BR:
psoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSm6_48470
DNA repair and recombination proteins [BR:
psoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSm6_48470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCD88440
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Position
5259876..5262440
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AA seq
854 aa
AA seq
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MARRSSEYNRKRNFEVTSEPHEAGRKGRSRAGALGFVIQKHDARHLHYDFRLELDGTLKS
WAVPKGPSLDPKDKRLAVHVEDHPLGYADFEGSIPAGQYGAGDVIVWDRGIWQPHGDPRA
AYAAGKLTFTLVGEKLSGEWSLVRTRLRGSGDKEQWLLIKQDDEVARPADEYDIVSAEPA
SVISGADVGSDAPAARPRASKGAGKAAKARKGEGTEPGMPDTLAPQLATLVDAPPSGDWR
YEIKFDGYRILARLRDGEVRLYTRNGNDWTARLPLQARDLAALDLGDSWLDGEVVVLDED
GLPSFQGLQNAFEIGRSHSILYYLFDAPYLDGRDLRQQPLEDRRAALEQVLKGHKRSLLR
FSQDFVASHESILESACSMSLEGVIGKRAGSPYRSARSPDWIKLKCRRRQEFVIVGYTAP
KGSRSGFGALLLAVHDEPGGAELRYAGRVGTGFDEARLADILGRLQAIARKDSPLTKALT
ASQRRGVRWVEPQLVAEVEFAEWTADAIVRQAAFIALRSDKPAEQIIREQPRSASSLRKA
PAAVAETAGQAGEGGRQTLAKVSISHPQRVIDDQSGTQKLELARYYADVAEWVLPHLKGR
PVSLLRAPEGVGGELFFQKHAERLAIPNIRHLDPSLDPGHARLMEIDTLEALVGAVQMGA
IELHTWGATSDRIERPDRLILDLDPDPKLPWKTMQEATRLTLSVLDELGLQAWLKTSGGK
GMHLVVPLARHAGWDEVKGFGKAIASFLARQLPERFVDKMGPKNRIGRIFVDYLRNQRGA
STVCAYSVRARPGLPVSVPVERDELERLKGSAQWTLGNLRQRLDGLDRDPWHDYVARQRI
TRAMWERLEAVPED
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcccgccgttccagcgaatacaaccgcaagcgcaatttcgaggtcacctccgagccc
catgaggctgggcgcaagggccggtccagggccggcgcgctgggtttcgtgatccagaag
cacgacgcccgccatctgcattacgacttccgcctcgaactggacggcaccctgaagagc
tgggcggtgcccaaggggccgagcctggaccccaaggacaagcgcctggccgtgcatgtg
gaggaccacccgctgggctacgccgacttcgagggcagcatcccggccgggcaatacggc
gcgggcgatgtgatcgtctgggatcgcggcatctggcagccccatggcgacccgcgcgcc
gcctacgccgccggcaagctgaccttcaccctggtgggcgagaagctcagcggcgaatgg
agcctggtgcgtacccgcctgcgtggcagtggtgacaaggagcagtggctgctgatcaag
caggacgatgaggtggcgcgcccggcggacgagtacgacatcgtctccgccgagccggcc
agcgtgatcagtggtgccgatgtgggcagcgatgcgccggccgctcggccgcgtgcttcc
aagggggctggcaaggcggccaaggcgcgcaagggcgagggcaccgaaccgggcatgccc
gacaccctggcgccgcaactggcgaccctggtggatgcgccaccctccggcgactggcgc
tacgagatcaagttcgacggttaccgcatcctcgcccgcctccgcgacggcgaggtgcgc
ctgtacacccgcaacggcaacgactggaccgcacgcctgccgctgcaggcccgcgacctg
gcggcgctggacctgggcgacagctggctggacggcgaggtggtggtgctcgacgaggac
ggcctgccgagcttccagggcctgcagaacgccttcgagatcggccgcagccacagcatc
ctctactacctgttcgacgcgccgtacctcgacggccgcgacttgcgccagcagccgctg
gaggaccgccgcgccgccctggagcaggtgctcaagggccacaagcgcagcctgctgcgt
ttctcccaggattttgtcgccagccacgaatcgatcctggaaagcgcctgttccatgtcc
ctggaaggggtgatcggcaaacgcgcgggcagcccctatcgctcggcccgcagcccggac
tggatcaagctcaagtgccgtcggcgccaggagttcgtcatcgtcggctacaccgcgccc
aagggcagccgtagcggtttcggcgctttgctgctggcggtgcacgacgagccgggcggg
gcggagctgcgctacgccggccgggtgggcaccggtttcgacgaggcacggctggccgac
attctcggccgcctgcaggccatcgcccgcaaggacagcccgctgaccaaggccctgacc
gccagccagcgccgaggtgtgcgctgggtggagccgcaactagtggccgaggtggaattc
gccgagtggaccgctgacgccattgtgcgccaggcggcgttcatcgccctgcgcagcgac
aagccggcggagcagatcatccgcgagcagccgcgtagcgcctccagcctgagaaaggcc
cccgcggcggtcgccgagacggccgggcaagccggggagggtggccgccagaccctggcc
aaggtgtccatcagccatccgcagcgggtcatcgacgaccagagcggcacccagaaactg
gaactggcgcgctactacgcggacgtggccgagtgggtgctgccgcacctgaaggggcgc
ccggtatccctgctgcgggcgccggagggcgtcggcggcgagttgttcttccagaagcat
gccgagcgcctggcgattcccaatatccgtcacctcgacccgtcgctggaccccgggcac
gcgcggctgatggagatcgacacgctggaggccctggtgggcgcggtgcaaatgggtgcc
atcgagctgcacacctggggcgccaccagcgaccgcatcgagcgacccgaccgcctgatc
ctcgatctcgacccggaccccaagctgccctggaagaccatgcaggaggccacgcgcctg
accctatcggtgctcgatgaactgggcctgcaggcctggctgaaaaccagcggcggcaag
ggcatgcacctggtcgtcccgctggcgcgccatgccggctgggacgaggtgaaggggttc
ggcaaggccatcgccagcttcctcgcccgccagttgccggagcgcttcgtcgacaagatg
gggccgaagaaccgcatcgggcgcatcttcgtcgactatctgcgcaaccagcgtggcgcc
agtaccgtgtgcgcctactcggtgcgggctcggccggggctaccggtatcggtgcccgtc
gagcgcgatgagctggagcggctcaagggctcggcgcaatggaccctgggcaacctgcgt
cagcgcctggacggcctggatcgagacccctggcacgactacgtcgcccgccagcgcatc
acccgcgccatgtgggagcgcctggaagcggtgccggaggactga
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