KEGG   Pseudomonas solani: PSm6_48470
Entry
PSm6_48470        CDS       T09213                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psoa  Pseudomonas solani
Pathway
psoa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psoa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PSm6_48470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psoa03400]
    PSm6_48470
Enzymes [BR:psoa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PSm6_48470
DNA repair and recombination proteins [BR:psoa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PSm6_48470
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: BCD88440
LinkDB
Position
5259876..5262440
AA seq 854 aa
MARRSSEYNRKRNFEVTSEPHEAGRKGRSRAGALGFVIQKHDARHLHYDFRLELDGTLKS
WAVPKGPSLDPKDKRLAVHVEDHPLGYADFEGSIPAGQYGAGDVIVWDRGIWQPHGDPRA
AYAAGKLTFTLVGEKLSGEWSLVRTRLRGSGDKEQWLLIKQDDEVARPADEYDIVSAEPA
SVISGADVGSDAPAARPRASKGAGKAAKARKGEGTEPGMPDTLAPQLATLVDAPPSGDWR
YEIKFDGYRILARLRDGEVRLYTRNGNDWTARLPLQARDLAALDLGDSWLDGEVVVLDED
GLPSFQGLQNAFEIGRSHSILYYLFDAPYLDGRDLRQQPLEDRRAALEQVLKGHKRSLLR
FSQDFVASHESILESACSMSLEGVIGKRAGSPYRSARSPDWIKLKCRRRQEFVIVGYTAP
KGSRSGFGALLLAVHDEPGGAELRYAGRVGTGFDEARLADILGRLQAIARKDSPLTKALT
ASQRRGVRWVEPQLVAEVEFAEWTADAIVRQAAFIALRSDKPAEQIIREQPRSASSLRKA
PAAVAETAGQAGEGGRQTLAKVSISHPQRVIDDQSGTQKLELARYYADVAEWVLPHLKGR
PVSLLRAPEGVGGELFFQKHAERLAIPNIRHLDPSLDPGHARLMEIDTLEALVGAVQMGA
IELHTWGATSDRIERPDRLILDLDPDPKLPWKTMQEATRLTLSVLDELGLQAWLKTSGGK
GMHLVVPLARHAGWDEVKGFGKAIASFLARQLPERFVDKMGPKNRIGRIFVDYLRNQRGA
STVCAYSVRARPGLPVSVPVERDELERLKGSAQWTLGNLRQRLDGLDRDPWHDYVARQRI
TRAMWERLEAVPED
NT seq 2565 nt   +upstreamnt  +downstreamnt
atggcccgccgttccagcgaatacaaccgcaagcgcaatttcgaggtcacctccgagccc
catgaggctgggcgcaagggccggtccagggccggcgcgctgggtttcgtgatccagaag
cacgacgcccgccatctgcattacgacttccgcctcgaactggacggcaccctgaagagc
tgggcggtgcccaaggggccgagcctggaccccaaggacaagcgcctggccgtgcatgtg
gaggaccacccgctgggctacgccgacttcgagggcagcatcccggccgggcaatacggc
gcgggcgatgtgatcgtctgggatcgcggcatctggcagccccatggcgacccgcgcgcc
gcctacgccgccggcaagctgaccttcaccctggtgggcgagaagctcagcggcgaatgg
agcctggtgcgtacccgcctgcgtggcagtggtgacaaggagcagtggctgctgatcaag
caggacgatgaggtggcgcgcccggcggacgagtacgacatcgtctccgccgagccggcc
agcgtgatcagtggtgccgatgtgggcagcgatgcgccggccgctcggccgcgtgcttcc
aagggggctggcaaggcggccaaggcgcgcaagggcgagggcaccgaaccgggcatgccc
gacaccctggcgccgcaactggcgaccctggtggatgcgccaccctccggcgactggcgc
tacgagatcaagttcgacggttaccgcatcctcgcccgcctccgcgacggcgaggtgcgc
ctgtacacccgcaacggcaacgactggaccgcacgcctgccgctgcaggcccgcgacctg
gcggcgctggacctgggcgacagctggctggacggcgaggtggtggtgctcgacgaggac
ggcctgccgagcttccagggcctgcagaacgccttcgagatcggccgcagccacagcatc
ctctactacctgttcgacgcgccgtacctcgacggccgcgacttgcgccagcagccgctg
gaggaccgccgcgccgccctggagcaggtgctcaagggccacaagcgcagcctgctgcgt
ttctcccaggattttgtcgccagccacgaatcgatcctggaaagcgcctgttccatgtcc
ctggaaggggtgatcggcaaacgcgcgggcagcccctatcgctcggcccgcagcccggac
tggatcaagctcaagtgccgtcggcgccaggagttcgtcatcgtcggctacaccgcgccc
aagggcagccgtagcggtttcggcgctttgctgctggcggtgcacgacgagccgggcggg
gcggagctgcgctacgccggccgggtgggcaccggtttcgacgaggcacggctggccgac
attctcggccgcctgcaggccatcgcccgcaaggacagcccgctgaccaaggccctgacc
gccagccagcgccgaggtgtgcgctgggtggagccgcaactagtggccgaggtggaattc
gccgagtggaccgctgacgccattgtgcgccaggcggcgttcatcgccctgcgcagcgac
aagccggcggagcagatcatccgcgagcagccgcgtagcgcctccagcctgagaaaggcc
cccgcggcggtcgccgagacggccgggcaagccggggagggtggccgccagaccctggcc
aaggtgtccatcagccatccgcagcgggtcatcgacgaccagagcggcacccagaaactg
gaactggcgcgctactacgcggacgtggccgagtgggtgctgccgcacctgaaggggcgc
ccggtatccctgctgcgggcgccggagggcgtcggcggcgagttgttcttccagaagcat
gccgagcgcctggcgattcccaatatccgtcacctcgacccgtcgctggaccccgggcac
gcgcggctgatggagatcgacacgctggaggccctggtgggcgcggtgcaaatgggtgcc
atcgagctgcacacctggggcgccaccagcgaccgcatcgagcgacccgaccgcctgatc
ctcgatctcgacccggaccccaagctgccctggaagaccatgcaggaggccacgcgcctg
accctatcggtgctcgatgaactgggcctgcaggcctggctgaaaaccagcggcggcaag
ggcatgcacctggtcgtcccgctggcgcgccatgccggctgggacgaggtgaaggggttc
ggcaaggccatcgccagcttcctcgcccgccagttgccggagcgcttcgtcgacaagatg
gggccgaagaaccgcatcgggcgcatcttcgtcgactatctgcgcaaccagcgtggcgcc
agtaccgtgtgcgcctactcggtgcgggctcggccggggctaccggtatcggtgcccgtc
gagcgcgatgagctggagcggctcaagggctcggcgcaatggaccctgggcaacctgcgt
cagcgcctggacggcctggatcgagacccctggcacgactacgtcgcccgccagcgcatc
acccgcgccatgtgggagcgcctggaagcggtgccggaggactga

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