Papaver somniferum (opium poppy): 113350319
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Entry
113350319 CDS
T05758
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03030
DNA replication
psom03420
Nucleotide excision repair
psom03430
Mismatch repair
psom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113350319
03420 Nucleotide excision repair
113350319
03430 Mismatch repair
113350319
03440 Homologous recombination
113350319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psom03000
]
113350319
03032 DNA replication proteins [BR:
psom03032
]
113350319
03400 DNA repair and recombination proteins [BR:
psom03400
]
113350319
Transcription factors [BR:
psom03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113350319
DNA replication proteins [BR:
psom03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
113350319
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
113350319
MMR (mismatch excision repair)
113350319
DSBR (double strand breaks repair)
HR (homologous recombination)
113350319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-like
RMI1_C
Motif
Other DBs
NCBI-GeneID:
113350319
NCBI-ProteinID:
XP_026450222
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All DBs
Position
2:205983132..205988450
Genome browser
AA seq
620 aa
AA seq
DB search
MSVKLTQNAISAILGGDLNLKPLVQVLDIKSAGKSQDRLRLLVSDSVSTQYAVIASQLNE
KVFDGEIRKGSVVQLIDYMCNTIQTRKIILILNMETIIPECAIIGNPKVMSEPQSAPSDN
NGGYQPRINSNMSAPTGNSNTTANFRPTVQPAYQPPAPNYRNHGSIVKNEAPARIIPIAA
LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSGGGEIRVTCFNAVVDRFYDS
VEVGKVYVVSKGSLKPARRDFNHLKNEWEIFLEQTSTLERCEDEDSAIPQQQFSFTPISE
IENVVNNSILDVIGIVITVNPSVPITRKNGMETQRRTLVLKDGSGRSVEITLWGEFCNKE
GRALQEIFDCGLSPVLAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAHTLRNWFDRGGK
DTAALSISRDLSQGGPKNEIRKTVAQIKNEGLGRGEKPDWVTLKAAISFIKTDSFCYTAC
PLMIGDRQCSKKVVSTSNNRWQCDRCNQEFDECDYRYLLQAQIQDNTGLTWVTAFQETGE
EILGCSAKELYQLKNEQEDDMKFMELVRQRLFHEFILRLKIKEESYGEDLKVKVTVMKAE
KVNFSAESRYLLNSFSRVSA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaaattaactcagaatgcgatttcagctattcttggaggggatttaaactta
aaacctctagttcaagtattagatataaaatctgctgggaaatcacaagatcggcttcga
ttacttgtttctgactcggtttcgactcaatatgctgtgatagcatctcagttgaatgag
aaagtgttcgatggtgaaattcgtaaaggatctgtggttcaattgattgattacatgtgt
aatactattcagactcggaagattattcttatactgaacatggagactattatccctgag
tgtgcaataattgggaacccaaaagttatgagtgaacctcaaagtgctccatctgataat
aatggtggataccagcccaggattaatagtaatatgtcagccccaactggtaatagcaat
acgactgcaaacttccgtcctactgtacaacctgcataccaacctccagcaccgaattac
aggaatcatggttccattgtgaagaatgaagcccctgctcgaataatcccaattgctgcc
ttgaatccttatcagggtcgatgggcaataaaggccagagtaactgcaaaaggtgatctc
cgccgctacaacaacgccaggggagatggcaaggtattctcgtttgatctccttgattct
ggtggaggagaaattcgtgtgacctgcttcaatgctgttgttgatcggttttatgattct
gttgaggttggaaaagtttatgttgtatcgaaaggaagcctcaaacctgctcgaagagac
ttcaaccatctcaaaaatgaatgggagatattcttggaacaaacctccacattggaaaga
tgtgaagatgaggacagtgcaataccgcaacaacaattttctttcacaccaatctctgag
attgagaatgtggtgaacaattccatactggatgtcattggcattgtcataactgtcaat
ccatcggttcctattacgagaaagaatggtatggaaacacagagaagaacactggtctta
aaagatggatccggccggagtgtcgaaataactctatggggtgaattttgcaacaaagaa
ggtcgagcgcttcaggagatatttgattgtggattatctccagttttagctgttaaagct
ggtaaagtaagcgacttcagtgggaaatcagtagggacaatttcatctagccaactcttc
atcaatccagatttccctgaagctcatacattgagaaattggtttgacagaggaggtaag
gatactgctgcactgtccatctctagagacctgagtcaaggaggaccgaaaaatgagata
cgtaagacagttgcacagattaaaaacgaaggtctcggaaggggagagaagcctgattgg
gttactttgaaagctgcaatatcttttattaagacagatagtttctgttatacagcttgt
ccattgatgattggagataggcagtgctctaagaaagtagtcagtacaagtaacaacaga
tggcaatgtgacagatgcaatcaagagtttgacgagtgtgattatcgatatctgcttcaa
gctcaaatacaagataatacaggattaacttgggtcacagctttccaagaaacaggggag
gagatcttgggttgttcagctaaggagttgtatcagctgaagaacgaacaagaagatgat
atgaagtttatggagctagttcgccagcgtctcttccatgagttcattctcaggcttaaa
atcaaagaagaaagttacggggaagatctgaaggtaaaggtaactgttatgaaggcagag
aaagtgaacttctcagctgagagtagatatctactcaattctttttcaagagtttctgca
taa
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