Paenibacillus sophorae: KP014_08495
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Entry
KP014_08495 CDS
T07500
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psop
Paenibacillus sophorae
Pathway
psop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KP014_08495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psop03400
]
KP014_08495
Enzymes [BR:
psop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KP014_08495
DNA repair and recombination proteins [BR:
psop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KP014_08495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QWU17188
LinkDB
All DBs
Position
complement(1826285..1827241)
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AA seq
318 aa
AA seq
DB search
MKFQPIIPFEPIIADRLPAGEQWIAQIKWDGVRMVSYYDGNSTELINRRGNNRTRQYPEL
ADAGLYCKAGSAILDGEVIALSGGKPSFHEVMRRDSLKKDSAIASMVRQIPVLYMVFDIV
YCNGEWLLDRPLSERQHLLEEMLLPHPHVQAVPSYSDPEALFSTARANGLEGIVCKELTS
LYTPGGKDKRWLKRKIIFDLNAVAGGVTFRDGIVNALLLGLYDADERLHYIGHAGTGRLT
VKDWRDLTALARSLAIDDMPFASLPQRVKGAFWIKPELVFKIHFVEWNISGTLRQPSIQA
RVDVSPGECRLPERLAGV
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttcagcccatcattccgtttgagccgatcattgcagaccgtctgcccgcggga
gaacagtggattgcccagatcaaatgggacggcgtccgcatggtctcctattatgacgga
aattccaccgagctgatcaacaggcggggaaataaccgcacgagacagtatccggaactg
gccgatgccggcctctactgtaaagccggttccgctattttggacggtgaagtcatcgcc
ctcagcggaggaaagccgtcctttcatgaggtcatgcgccgggacagtctgaagaaagat
tcagccattgcttccatggtgcggcagattccagttctgtacatggtgttcgacattgta
tattgcaacggagaatggcttcttgaccggccgttatccgaacgccagcatttgctagaa
gaaatgctcctgcctcaccctcatgtgcaggccgtgcctagctacagcgatcccgaagcg
ctcttttccaccgcccgggctaacgggcttgagggtattgtctgcaaggagcttacgagt
ctctatacaccgggcggaaaagacaaacgctggctcaagcgcaaaatcattttcgatctc
aatgccgtcgctggaggcgtcacgtttcgggacggcatcgttaatgctctgctgctcggc
ttgtatgacgctgacgaacggctgcattatatcggacatgcgggaacagggaggctgacc
gtgaaggattggcgggatttaaccgctctcgcgcgcagccttgccatagacgatatgccg
tttgcttcactgccgcaacgggtcaagggcgcgttctggattaagccggagctggtgttc
aagatccattttgttgaatggaacatctccggtacacttcgccagcccagtattcaggca
agagtcgatgtttctcccggagagtgccggctgccggaacgtttagcgggagtctga
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