Polyodon spathula (Mississippi paddlefish): 121325122
Help
Entry
121325122 CDS
T07273
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121325122 (col13a1)
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121325122 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
121325122
NCBI-ProteinID:
XP_041123346
LinkDB
All DBs
Position
13:complement(22917214..23091129)
Genome browser
AA seq
677 aa
AA seq
DB search
MEDDPKWSGSAQPASARTFSAHPCKKKSPKSVSAWSGIAFCCVLSMLSMGFCMLVYLRTS
ELQSRVLNLEKERDTHVTAWISLDQMEPVILGKLDQLLEEKLTARLPRTREAREAPHSCV
CPPGPPGARGKRGRNGDPGPPGAPGEPGMSIIGPRGPPGQPGSRGFPGFPGPIGMDGKPG
LTGLKGDMGTKGLKGDYGEPGLKGEKGMCGDYAHRLLPILNTVRTLSPLTPVIRKRYQGE
QGQAGIQGPPGPPGPPGPLGATGPSGPSGTPGKPGETGKPGKDGKGEPGIPGIPGRKGDG
GEPGPPGPAGPQGSKGDRGFKGVEGKTGQPGEKGEKGEKGSPGESGLPGFPGTKGEKGEL
STAASGIKGEPGMPGMQGEKGDKGLKGDSGVPGPEGPSGPRGPPGPAGEPGKTEMLDYNS
NVDEKLQEIRTLALLGPPGLPGPPGPSGTPGTKGEMGLPGAPGLDGEKGPRGKAGEQGPP
GPEGPKGRDGFTGQKGEPGIMGFTGPKGDKGDLGPAGAPVSGPPGLPGAEGPAGPLGPPG
LSGPKGEAGRDGRKGDKGDLGEKGEKGDRGPLGLPGAHGLDGRPGPVGVMGPMGAPGPAG
PKGEGGDKGDPGPAGPAGTPGIPGLVGPPGEKGNRGERGKRGNRGNKGDKGDQGAPGLDA
PCPLGEDGLPVQGCWNK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgatcctaaatggagcggttctgctcagcctgcctctgcaaggactttcagt
gcgcatccttgcaaaaaaaagtcgccgaagagcgtctcggcttggtcggggattgcattc
tgctgcgttttgtccatgttgtccatggggttttgcatgttggtgtacctgcggacctcg
gagctgcagtctagagttttaaacttggagaaggagagagacactcacgtaacagcttgg
atttcgctggaccaaatggaacccgttatattgggaaagctcgaccagcttttggaagag
aaactgaccgcccgcttgcctcggaccagagaagccagagaagccccccacagctgcgtc
tgccccccagggccaccaggagcgagaggaaagcgaggtcgcaatggggatccaggacca
cctggtgcaccaggggagccaggcatgtccattatcgggccacgcggacctcctggccag
ccaggatcgagaggattccctggattcccgggcccaattggtatggatggaaaaccgggt
ctgactggtctgaaaggtgacatgggtacaaagggacttaaaggagattatggtgaacct
ggcctcaaaggtgaaaagggtatgtgcggagactatgctcacaggctattacctatcctg
aacactgtgcgcacgctgtctccactgacgcctgtaatcagaaagcggtaccagggtgag
caggggcaagctgggattcaaggaccccccggacccccaggcccccctgggcccctagga
gccacaggaccatcagggcccagcggaactccaggtaagcctggtgaaactggaaagcca
gggaaagatggcaagggtgaaccaggaattccaggcatccctgggagaaagggagatggt
ggtgagccaggcccccctggacctgcaggcccacagggctcaaagggagacagaggtttc
aagggagtggaagggaaaacaggccagccgggagagaaaggagaaaagggggagaaaggg
agtcctggagagtctggattgcctggcttccctggaacaaagggcgagaagggtgagctg
agcactgcagccagtggaatcaaaggagagccgggcatgccagggatgcagggggagaaa
ggagacaagggcttaaagggtgactctggagttcctggaccagaaggaccatctggacca
agaggtccgcccggtccagcaggggaacctggaaagactgagatgctcgactacaacagc
aatgtggatgaaaagctgcaggaaataaggacattagctttgctgggtccccctggtcta
ccagggccccctggcccctcaggaacaccaggaacgaagggagaaatggggttacctggt
gcacctggtcttgatggggagaagggcccccgagggaaagcaggcgagcagggcccccct
ggccctgagggccccaaaggcagggatggtttcaccgggcagaagggggagccaggaatc
atgggcttcactgggccgaaaggagacaagggagacctaggtccagctggtgctccggtt
agtggccccccaggtctcccgggagcagagggaccggccgggcccctgggacctccggga
ctttcagggccaaagggtgaggcaggaagagatggcaggaagggtgacaagggggatctg
ggagagaagggagagaaaggagacagaggccctctgggactgcccggtgctcatggttta
gacggcaggcctggcccagtgggagttatgggaccaatgggtgcaccagggccagcagga
ccaaaaggagaggggggagacaagggagaccccggacctgcaggaccagccgggacccca
ggaatccctggtttagtaggaccaccgggagagaaaggaaaccggggggagaggggaaag
agaggcaacagggggaacaaaggggataagggagaccaaggagcacctggattggatgca
ccatgtcctttgggtgaagatggcttgccggtgcagggatgttggaataaatga
DBGET
integrated database retrieval system
