Pseudohongiella spirulinae: PS2015_2461
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Entry
PS2015_2461 CDS
T04158
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pspi
Pseudohongiella spirulinae
Pathway
pspi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pspi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PS2015_2461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspi03021
]
PS2015_2461
03400 DNA repair and recombination proteins [BR:
pspi03400
]
PS2015_2461
Enzymes [BR:
pspi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PS2015_2461
Transcription machinery [BR:
pspi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PS2015_2461
DNA repair and recombination proteins [BR:
pspi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PS2015_2461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Phage_sheath_1
Motif
Other DBs
NCBI-ProteinID:
ALO47095
UniProt:
A0A0S2KFH3
LinkDB
All DBs
Position
complement(2666671..2670900)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLGLLKSQSQSDEFDSIRIGLASPEMIRAWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFESFVVTDPGMTTLEKGQLLTDEQYYEAMEEFSDEFDAKM
GAEAIQQLMRDLDLPDEINRLREEIPATNSETKLKKLSKRLKLLEAFAESGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFGKLERRGLATTIKAAKKMVERETPEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILAPANGEPIIVPSQDVVLGLYYMTRERVNAQGEGMIFADVDEVKRAYDTK
QAHLQARIKVRLHDYELNEAGETVKVRRMVDTTVGRVLLYAIVPAGLPFAMVNQKMTKKQ
ISAVLNACYRNVGLKETVIFADQLMYTGYRYSTVSGSSIGVNDFVIPDAKAKIIGQAEAE
VEEIENQYASGLVTQGEKYNKVIDIWSRANDLVAKAMMEGLSTEPVINRDGEEERQESFN
SVYIYADSGARGSPAQIRQLAGMRGLMARPDGSIIETPITANFREGLSVVQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDISQDLVITEEDCGTQDGLIMRPIIEGGDIIAALGERVL
GRVLINDVVHQDTGEVLLEAGTMLDEKMVERLETMGVDEVHVRSAITCDTRFGICRQCYG
RDLARGHLANVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRATAADNVQVRTTGSVHL
HNMKTVQNTNGGLVVVSRSGELIVNDEAGREREKYKLPYGAVITLNEDRKVESGQVVATW
DPHTHPIITEVAGKVAFTNMEEGLTVRRQTDEITGLSSLTVIDPAERPSAAKELRPAITL
LDEKGKELPLPGTNMPAVYFLPSSAIIAVQDSVQLNVGDVIARIPQEGSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTVTFGKETKGKRRLVITPKEGESMPDGSTHYEALIPKWR
AMTVFEGEFIEKGEVVSDGPPSPHDILRLKGVQALAEYIVNEVQEVYRLQGVRINDKHIE
VIVRQMLRKVEITDPGDSSLIRGEQVTITQVLEENDKLREAGKVEARYQRQLLGITKASL
ATESFISAASFQETTRVLTEAAVTGKRDHLRGLKENVVVGRLIPAGTGLAYHEARRQQAA
ANRAMQEEGSGVSASDVEAALTEALKSGV
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttgctgggattattgaagtcacagtcacaatcagatgagtttgactcgatt
cgcatcggtctggcgtcaccggagatgatccgcgcctggtcgtttggcgaagtaaaaaag
ccggaaaccatcaactaccgaacattcaagccagagcgtgatggtctgttctgtgccaag
atttttggtccggtaaaagactatgagtgcttgtgcggcaagtacaagcgtctgaaacat
cgcggtgtgatctgtgagaagtgcggcgtggaagtggcgctgtctaaagtacgtcgtgag
cgcatgggccacattgagctggccagccctgtcgcgcatatatggtttctgaagtcacta
ccatctcgtattggtttgctgctggatatgacgctgcgtgatatcgagcgcattctctac
ttcgagtcatttgtcgtgaccgatccgggtatgactaccctggaaaaaggacagctgctg
acggatgagcaatattacgaagcaatggaagaattcagtgatgaattcgatgccaagatg
ggtgctgaagctattcagcagctgatgcgtgatctggacctgccagacgaaatcaatcgt
ctgcgcgaagagattccggccactaactcagagaccaagctcaagaaactgtcaaagcgc
ctgaaactgctggaagcattcgctgagtcgggcaacaagcctgagtggatggtgctgact
gtgctgcctgtgctgccaccggatctgcgtccgttggtcccgctggatggtggccgattt
gcaacgtccgacctgaatgatctgtatcgccgggtcatcaatcgtaacaaccgtctgaag
cgtctgctggatctgaatgcgccggatattatcgtgcgtaacgaaaagcgtatgttgcag
gaagccgtggacgccctgctggataatggacgtcgcggtcgcgctattacaggtaccaac
aagcgcccattgaagtctctggctgacatgatcaaaggcaagcagggtcgattccgtcag
aacctgctgggtaagcgagtcgactactctggccgttcggttattgttgtgggaccgact
ctcaaactgcatcagtgtggtctgcccaagaaaatggccctggaactgttcaagccattt
attttcggcaagctggagcgtcggggcctggctacgaccatcaaagccgccaagaagatg
gtagagcgcgaaacgccggaagtatgggatattctggctgaagtgatccgcgaacatccg
gttatgcttaaccgggcgccgacacttcaccgtctgggcatccaggcgttcgagccagtg
ctgattgaaggtaaagcgattcaattgcacccgctggtgtgtgccgcttataacgctgac
tttgacggcgaccagatggctgtccacgtaccgttgacgctggaagcccagctggaagcg
cgtacgctgatgatgtccaccaacaacattctggcaccagcaaacggtgagccgatcatc
gttccgtcgcaggacgtggttctgggtctgtattacatgactcgtgagcgcgttaatgcg
cagggcgagggcatgatctttgccgatgttgatgaggttaagcgtgcatatgacaccaag
caggcgcacctgcaggctcgaatcaaggtgcgtttgcatgactacgagctgaatgaggcg
ggtgagacggtcaaggttcggcgtatggtcgataccactgtcgggcgcgtattgctttat
gccatcgtgccggccggcctgccgttcgccatggtcaatcagaaaatgaccaagaaacag
atctctgctgtccttaacgcctgttatcgtaatgtgggcctgaaggaaacggttatcttt
gcagaccagttgatgtataccggttatcgctattcaaccgtctccggttcatcgatcggg
gttaatgactttgttattcctgatgcaaaagccaaaatcattggtcaggctgaggctgaa
gttgaagagatcgagaatcagtatgcatccggtctggtgactcagggtgagaagtacaac
aaagtgatcgatatctggtcgcgtgccaatgatcttgttgccaaggcgatgatggagggc
ctgtcaacagagcctgttatcaatcgcgatggtgaggaagagcggcaggaatcgttcaac
tctgtatacatctatgccgactctggtgcgcggggttcgcctgcccagattcgtcagctg
gcaggtatgcggggtctgatggctcgtcctgatggttcgatcatcgagacgccgattacc
gctaacttccgggaaggtctgagcgttgtgcagtacttcacctcaacgcacggtgcgcgt
aaaggtctggcggatacggcgttgaagacagccaactcaggttatctgactcgacgactg
gttgatatttcccaggatctggtaatcaccgaagaagattgtggtacgcaggacggcctt
atcatgcgtcccatcatcgagggtggtgacattattgcggccctgggtgagcgtgtgctg
ggccgggtgctgatcaatgatgtagttcaccaggataccggtgaagtgctgcttgaagcg
ggcactatgctggatgaaaaaatggtcgaacgactggaaaccatgggtgtggatgaggtg
catgtgcgctcagccatcacctgtgatacacgcttcggcatctgtcgtcagtgttatggt
cgtgacctggcgcgtggtcatctggctaatgttggtgaagccatcggtgtcatcgcggcg
caatccattggtgagcctggcacccagttgaccatgcgcaccttccacatcggtggtgcg
gcatcacgggcgactgcggcggataacgttcaagtgcgtacaaccggctcggtacacttg
cataatatgaagacagtgcagaacaccaatggtggcctggttgtggtctcccgttctggt
gagctgatcgtaaacgacgaggccggtcgtgagcgtgaaaagtataagctgccttatggt
gcggtcattacgctgaatgaagatcgcaaggttgagtcaggtcaggttgtggcaacctgg
gatccacacactcacccgatcatcacagaagtggccggtaaagttgccttcactaacatg
gaagaaggcctgacagtgcgccgtcagacagatgaaatcactggtttgtccagtctgacg
gtaatcgatccggccgagcgtccgtcggcggcgaaagagctgcgtccggcgatcacgctg
ctggatgagaaaggcaaggaactgccgctgccgggtactaacatgccggctgtttacttc
ctgccttccagcgcgattattgcggtgcaggacagcgtacagcttaacgtcggtgacgtt
atcgcccgtattcctcaggaaggctccaagacacgcgacatcactggtggtctgccgcgg
gttgctgacctctttgaggcgcgcaaacccaaagagccagccattcttgcggagatctcc
ggtacggtcacgtttggtaaggaaaccaaaggcaagcgtcgcttggtgattacgccgaaa
gaaggcgagagcatgccggatggcagtactcattatgaggcgctgattccgaaatggcgt
gcgatgaccgtgtttgaaggtgaatttatcgagaagggtgaagtcgtgtctgacggtccg
ccctcgccgcacgatatcctgcgcctgaaaggcgtccaggcgctggccgagtatatcgtc
aacgaagtgcaggaagtttaccggttgcagggtgttcgaattaacgacaagcatatcgaa
gtgattgtgcggcagatgctgcgtaaagttgaaatcaccgatccgggtgattccagcctt
atccgcggtgagcaggtcaccattacgcaggtgcttgaagagaatgacaagctgcgggaa
gcaggcaaggttgaagcgcgctaccagcgtcaattgctgggtattaccaaggcatcgctg
gcaactgagtcgtttatctctgcggcgtcattccaggaaacaacccgcgtgctgactgag
gctgccgtgaccggtaagcgtgatcatctgcgtggactgaaggaaaacgtggttgttggt
cgtctgatacctgcgggtaccggactggcataccacgaggcgcgccgccagcaggccgcc
gcaaaccgggccatgcaggaagaaggctcgggcgtatctgccagtgatgtggaagcagca
ctgacagaagcgctgaaatccggcgtctga
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