Paenibacillus spongiae: L1F29_09030
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Entry
L1F29_09030 CDS
T09530
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pspn
Paenibacillus spongiae
Pathway
pspn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1F29_09030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspn03019
]
L1F29_09030
03009 Ribosome biogenesis [BR:
pspn03009
]
L1F29_09030
Enzymes [BR:
pspn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L1F29_09030
Messenger RNA biogenesis [BR:
pspn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L1F29_09030
Ribosome biogenesis [BR:
pspn03009
]
Prokaryotic type
rRNA helicases
L1F29_09030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UVI31940
LinkDB
All DBs
Position
1980314..1981900
Genome browser
AA seq
528 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEESTPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPL
INKIPTSEDRIVALIMTPTRELAIQVSEEIGKLTRFKGLRSLAIYGGQEIGRQIRALKKR
PQIIIGTPGRMLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDITSILSLIPENRQTML
FSATMPPNIQKLAQQFLKNPEHVSVIPKQVSVPLIDQAYIEVHERQKFDALSRLLDMESP
ELAIIFGRTKRRVDELSEALQKRGYTADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVSHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRELDHLHFIEKVTR
HRIPKKPLPSMAEAIEGKQRMTAERILELVSEDSINEYKGIAIQMLEQYDSVNLLAAAIK
LLTGEKKDVSIELTPEDPIRAKKRRPDVRSNGRRFSSSSFGGNRSGGSGGSRGRSDSRGG
YGSGRSSSSYGSGGGYNRDRDSQYKGKGEGRSDNTRRPRPSSDDFVNS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgctgaattcggcttggaaccaaaagttttgcaagccatcacggaactc
gggttcgaagaatcgaccccaatccaatcgaagtccattccaattgcgctcaccggcagc
gatttgatcggtcaagctcagacgggaacgggcaagacggctgccttcggcattccgttg
attaacaaaatcccgactagtgaagaccggatcgttgctttgattatgacaccgacccgc
gaacttgccatccaggtatcggaagaaatcgggaagctgacccgctttaaaggactgcgt
tcgctggccatctatggcggacaagaaatcggccgccaaattcgggccttgaagaaaaga
ccccaaatcatcatcggtacaccgggtcgcatgcttgaccatatcaaccgcaagaccatc
cgtctagacgatgtccaaacggtcgttctcgatgaagcggacgaaatgctggacatgggc
tttatggaggacatcacttccatcttgtcacttattccggagaatcgccaaacgatgctg
ttctcggctacaatgcctccgaacattcagaagctggcgcagcagttcctcaagaatccg
gaacatgtctccgttattcccaagcaggttagcgtaccgctgattgaccaagcgtacatc
gaagttcacgaacgccagaagttcgatgcgcttagccgtctacttgatatggaatcgcca
gagcttgccattatcttcggccgtaccaaacgccgggtagacgagcttagcgaagcgctc
cagaagcgcggatacacggctgacggcctgcatggcgacttgtcccagaaccagcgcgac
gcggttatgcgcaagttccgcgacggcagcatcgacgtgctggttgctaccgacgttgcg
gcacgcgggctcgacgtatcaggcgtatcgcatgtcattaacttcgacctcccgcaagat
ccggagagctacgttcaccgtatcggtcgtacaggccgtgcgggcaaagaaggaacggca
tggtcgtttgttaccccacgcgaactggaccacctgcatttcattgagaaagtgacgcgt
catcgcattccgaagaagcctcttccaagcatggccgaggcaatcgaaggcaaacagcgt
atgacggcggagcggattctggaactcgtttcggaagattccattaacgaatacaaaggc
attgcgatccaaatgctggagcagtacgattccgttaacctgcttgcagctgcgatcaag
ctgctcaccggcgagaagaaggacgtcagtatcgaactgacgccggaggatccgattcgt
gcgaagaaacgcagaccggatgtccgttcgaacggacggagattctccagcagctcgttc
ggcggcaaccgcagcggcggaagcggaggttcgcgcggacgttctgacagccgcggcgga
tacggaagcggacgcagcagcagcagctatggcagcggcggcgggtacaaccgcgaccgt
gacagccagtacaagggaaaaggagagggccgcagcgacaacactcgccgtccgcgtcca
tcctccgatgattttgtcaactcataa
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