Pandoraea sputorum: NA29_01110
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Entry
NA29_01110 CDS
T03554
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pspu
Pandoraea sputorum
Brite
KEGG Orthology (KO) [BR:
pspu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspu03016
]
NA29_01110
Enzymes [BR:
pspu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NA29_01110
Transfer RNA biogenesis [BR:
pspu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NA29_01110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AJC14994
LinkDB
All DBs
Position
complement(5027079..5029295)
Genome browser
AA seq
738 aa
AA seq
DB search
MSPIAIDGCFMNIFFEESGGFKAGTVLSQQGESYQVELPGGRRSKIKGRDVLLRFESPTP
AELIAQAQAAAQDIDMSFLWECAPADEFAFPVLAAEYFGEGASVAQQAGLALALQASPIY
FRRKGRGQYQRAAQEQLEAALAGLARKQQQAELQQSYADQMIAGSLPDALKGKELQLLFR
PDKNALEWKALDAAAIALGKTHAEVMLACGGIASPRAYHEAAFLYEHFPRGTGFPDLGPT
PLPPDDLPLADVQAFSIDDSTTTEIDDALSVQLLPDGLLRVGIHIAAPALGITRGDAIDE
IARVRLSTVYAPGEKITMLPDSVVETYTLAEGGARPALSLYVVVKADTYEIVTTETRAEL
VPISANLRHNELDAIITAETLADGSGDYPHKEELRLLWPFAQSLYDKRQAARVGYGLRPE
VQNKTDFNFYVDGEHVTIKQRLRGAPLDLIVAEMAILANSRWGRLLAECGVPGIYRAQRA
YGVNRTRMQTSPAPHEGLGVEQYAWSTSPLRRYVDLVNQWQLIACVRHGVTAKLAAPFKP
KDADLYATVSSFEAAYAAYGEHQSRMERYWCMRWLIQENKSQVQASVLKGDTVRLNDIPL
TLIVPGLGLHARGTQIMLDVLSFDVVTLSISVRISQVLGASQTELADDDDEGDGGAGDGG
EGGGADGTEGTDGGEGSDSSESSEGDVGATGAAEGAADDGDTASARRDDSVAPSNAGSPM
AAALMAAGAHDASASPAC
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atatcgcctattgcgatcgatggctgtttcatgaacattttttttgaggaatccggcggc
ttcaaggctggcacggtgttgtcgcagcagggcgagtcgtatcaggtggaattgcctggc
gggcgtcgcagcaagatcaagggacgcgacgttctgctacgtttcgagtcgcccacgccc
gccgagttgatcgcgcaggcacaggccgcggcacaggatatcgatatgagtttcctgtgg
gagtgcgcgccggctgacgaattcgcgtttcccgtcctcgcggcggagtacttcggtgag
ggcgctagcgttgcgcagcaggccgggctggcgttggccttgcaggcgtcgccgatctat
ttccgtcgcaaaggccgcggtcagtatcagcgcgccgcgcaggaacagcttgaggccgca
ctggccggactggcgcgcaagcaacagcaagcagagttgcagcagtcgtacgccgatcag
atgatcgccggctcgctgccggacgcgctcaagggcaaggagctgcaactgctgttccgt
cccgacaagaacgcgctcgaatggaaggcgctcgatgcggctgccattgcgttgggcaag
acccacgccgaggtcatgctggcgtgtggcggtattgcgtcgccgcgcgcctatcacgag
gccgccttcctctacgaacacttcccgcgcggtaccggcttccccgacctggggccgacg
ccgctgccgcccgacgatcttccgcttgccgatgtgcaggcgttctcgatcgacgattcg
acgacgacggaaatcgacgacgccctctcggtgcaactgctgccggacggtctgctgcgc
gtgggtatccacattgcggcaccggcgttgggcatcacgcgcggcgacgccatcgacgag
atcgcccgtgtgcgtctgtcgacggtctacgcgcccggcgagaagatcacgatgctgccc
gattcggtggtcgagacctatacgctcgccgagggcggggcgcgcccggcgctgtcgctg
tatgtcgtggtcaaggccgatacgtatgagatcgtgacgaccgagacgcgcgcagaactt
gtgccaatctccgccaacctgcgtcacaacgaactcgacgccatcattacggcagaaacg
ctggccgatggcagcggcgattatccgcacaaggaagagctgcgtctgctgtggccgttt
gcgcaatcgctgtacgacaagcgtcaggctgcgcgcgtgggctacggcctgcgcccggaa
gtacagaacaagaccgacttcaatttttacgtcgacggcgagcacgtcacgatcaagcaa
cgtctgcgtggcgcaccgctcgatctgatcgtcgccgaaatggcgattctcgcgaacagc
cgctggggacgcctgctggccgaatgcggcgtgccgggcatctaccgcgcacaacgtgca
tacggcgtgaaccgtacgcgcatgcagacgtcgcccgccccgcacgaagggctgggtgtc
gagcagtacgcgtggagcacgtcgccattgcgccgctatgtcgaccttgtgaaccagtgg
caactgatcgcctgcgtgcgccacggcgtgacggccaaactggccgcgccgttcaagccg
aaagatgccgatctctatgcaacggtgtcgagcttcgaggcggcgtacgcggcctatggc
gaacatcagagccgcatggagcgctactggtgcatgcgctggctgattcaggagaacaag
tcgcaggtgcaggcgagtgtgctcaagggcgataccgttcgtctgaacgacatcccgctc
acgctcatcgtgccgggactcggattgcatgcacgcggcacgcagatcatgctcgacgtg
ctgtcgttcgacgtcgtcacgctcagtatttcggtgcgtatctcgcaggtgctcggcgcg
agccagaccgaactcgcggatgatgacgacgaaggtgacggcggtgccggcgacggtggc
gaggggggcggcgctgacggtaccgaagggaccgacggtggcgaaggctcggattcgtcc
gaatcgtctgaaggcgatgtcggtgcgacgggggctgccgaaggcgctgctgacgatggc
gacactgcgtctgcccggcgcgatgactcggtcgcgccgtccaacgctgggtccccgatg
gccgctgcgctcatggcggcaggggcgcacgacgcttcggccagccccgcgtgctga
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