Paracoccus stylophorae: JHW45_00075
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Entry
JHW45_00075 CDS
T08951
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pstl
Paracoccus stylophorae
Pathway
pstl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pstl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JHW45_00075 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstl03400
]
JHW45_00075 (ligD)
Enzymes [BR:
pstl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JHW45_00075 (ligD)
DNA repair and recombination proteins [BR:
pstl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JHW45_00075 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WCR10866
LinkDB
All DBs
Position
complement(22319..24745)
Genome browser
AA seq
808 aa
AA seq
DB search
MSQLETYLEKRDFDATPEPSAAGAPSRLGLRYSIQNHRATRLHWDLRLEWDGVLLSWAIT
RGPSFDTAEKRLAVRTEDHPLSYLGFEGQIPPGNYGAGTVMLWDIGWWQPLDPVARGLKK
GHLHFRLHGRRMTGDWNLILMKGRKPGDAKRQNWLLIKSDDEAAGQRDPVRRYTRSVATG
RTFDQIKKDDAPVRPQRDGRLPGHVAPQLATLTDDLADPDSHWHELKLDGYRALIALGKG
GPVVFTRSGLDWSDRFAALLPSFDDLDCDSALIDGEIVAGAGLQGFSALQDAIKAGGPFG
FVAFDLLSLNGDDLRDRKLTERRKALEKLMKPVPPMGALQLSPIVEGDPQDAFDTVCRAQ
GEGLIAKRRDARYRSGRGTDWLKIKCRRRAEFVIVGWQASSAAGRPFASLALAAREGGDL
RYVGKVGTGFDEGAMDDLAARMRPLTRKTAPVEAPKSETRGVTWVTPQLVAEIDYAELTA
QGRLRHAVFLDLREDKPADQVRIEREVPMSDGERIAGIAVSSTDRVIFPRPRLTKGDLAR
YYDRIAPAMLDEAADRPLSLLRLPEGMEGERFFQKHPGKGFPDALKTVEITEKDGEAEPY
AYVTDAAGIVGAVQMGTVEFHIWGARRDRVERPDRLVFDLDPDEGLKFAEVKSAATDLRD
RLADLGLACWPLLTGGKGIHLVIPLRRTIGWDTAKLFCRGVATLMAQHQPKRLTAQMSKA
RRTDRIFIDWLRNERGSTAIAPFSVRARPGAPVAMPVAWDELSGIRSASAFGTDAAHERG
WQGVVRPELQTITQGVSEALERAFDEIS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagcttgagacctatctggagaaacgggatttcgacgccacgcccgagccgtcc
gccgcgggcgcgccatcgcggcttggactgcgctattccatccagaaccatcgcgccacg
cgcctgcactgggatctgcggctggaatgggatggcgtgctgctgagctgggcgatcacg
cgcggcccgtccttcgacaccgccgaaaagcggctggcggtgcggaccgaggatcacccg
ctgtcctatctgggcttcgagggccagattccgccgggcaattacggcgcgggcacggtc
atgctgtgggatatcggctggtggcagccgctggacccggtcgcgcgcgggctgaaaaag
gggcatctgcatttccgcctgcacgggcggcggatgaccggcgactggaacctgatcctg
atgaagggccgcaagccgggcgatgcgaaacgccagaactggctgctgatcaagtccgat
gacgaggccgccggccagcgcgatccggtgcgccgctacacgcgcagcgtcgcgaccggc
cggacctttgaccagatcaagaaggacgatgcgcccgtcaggccgcagcgcgacggcagg
ctgccgggccatgtcgccccgcaactggccacgctgaccgacgatctggccgatcccgac
agccactggcacgaactgaagctggacgggtatcgcgcgctgatcgcgttgggcaagggc
gggccggtggtcttcacccgcagcggcctggattggagcgatcgtttcgccgcgcttctg
ccgtccttcgacgatctggactgcgattcggccctgatcgacggcgagatcgtggccggc
gcgggtcttcaggggttcagcgcgttgcaggacgcgatcaaggcgggcgggccgttcggg
ttcgtggccttcgatctgttgtcgctgaacggcgacgacctgcgggaccgcaagctgacc
gaacggcgcaaggcgctggaaaaactgatgaagcccgtcccgccgatgggggcgttgcaa
ctgtccccgatcgtcgagggcgatccgcaggatgcattcgacacggtctgtcgggcgcag
ggcgaagggctgatcgccaagcggcgcgacgcgcgctatcgcagcgggcgcggcaccgac
tggctgaagatcaagtgtcgcaggcgggccgagttcgtcatcgtcggctggcaggccagc
agcgccgcgggccggccctttgcctcgctggcgctggcggcgcgcgagggcggggatctg
cgctatgtcggcaaggtcggcaccgggttcgacgagggtgcgatggacgatctggccgcg
cggatgcggcccctgacgcgcaagaccgcgccggtcgaggcgccgaaatccgagacacgg
ggcgtcacgtgggtcacgccgcaactggtggccgaaatcgactatgccgaactgacggcg
cagggccggctgcgccacgcggtgtttctggacctgcgcgaggacaagccggccgatcag
gtgcgcatcgaaagagaggttccgatgagcgatggcgaaaggatcgcagggatcgcggtc
agcagcacggaccgggtgatctttccgcgcccgcgcctgaccaagggcgatctggcccgc
tattacgaccgcatcgcgccggcgatgctggacgaggccgccgaccgccccctgtcgctg
ctgcgcctgcccgaggggatggagggcgagcggttctttcagaaacatcccggcaaaggg
tttcccgacgcgctgaagacggtcgagatcaccgaaaaggacggcgaggccgaaccctat
gcctatgtcaccgatgcggcggggatcgtgggcgcggtgcagatgggcacggtcgagttc
catatctggggcgcgcggcgcgaccgggtggagcggcccgaccggctggtcttcgatctg
gaccccgacgaggggctgaaattcgccgaggtgaagtcggcggccaccgatctgcgcgac
cggctggccgatctggggcttgcctgctggccgctgctgacggggggcaaggggatccat
ctggtcatcccgctgcgccgcacgattggctgggacacggccaagctgttctgtcgcggc
gtggcgaccctgatggcgcagcatcagcccaagcggttaaccgcgcagatgtcgaaagcg
cgccgcaccgatcgcatcttcatcgactggctgcgcaacgaacggggatcgacggccatc
gcgccattctcggtcagggcgcggccgggcgcgccggtggcgatgccggtcgcatgggac
gaattgtcgggcatccgcagcgcctcggccttcggcaccgatgcggcgcatgaacgcggc
tggcagggcgtcgtgcggcccgaattgcagacgatcacccagggcgtcagcgaggcgctg
gaacgcgccttcgatgaaatatcgtga
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