Pelolinea submarina: Pelsub_P1832
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Entry
Pelsub_P1832 CDS
T05783
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
psub
Pelolinea submarina
Pathway
psub02020
Two-component system
psub02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psub00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pelsub_P1832
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pelsub_P1832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psub03021
]
Pelsub_P1832
Transcription machinery [BR:
psub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pelsub_P1832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_11
PDDEXK_6
CENP-B_N
Fe_dep_repress
TetR_C_39
HTH_Crp_2
SF3b1
DZR_2
DZR
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
BBB48604
LinkDB
All DBs
Position
complement(2138178..2139593)
Genome browser
AA seq
471 aa
AA seq
DB search
MYQRQFHKLQPQTTAHLAQTMTLLSMNVDELNQEIIRAMAENPALVMKEERRCPGCGRLL
TSNQICPVCSKPKNPGSDEAIVFLSPRNEITYSKSSTDEEYFSDEISNTDEVSLAEFILR
QIAMDLEQEDRIIAAYILNQVDEDGFLQERLVEIASYYHVPLSRVEHVKNMIQHAEPLGV
GSSSPEEALLIQLEMVGETQKVPPYYFDIIKGGLSMLSKKQYPQIAKTLGISSSEAEKAI
EFISKNLYPFPARAHWGSFRMPSEDKGQVYTSPDVIINFMNHDPNLPLMVEIITPSYGTL
DINPLFKQAIKQSSEETKEDLKPDLEKANLLIKCIQQRNNTMQRLMEKIVNMQKEFIVEG
EKFIQPVTRAEISKELEVHESTISRAVSNKSVQLPSGQIIPMDVFFDKSLGIRATMREFI
EAENKDKPLSDSDLVKLLEKDGYELARRTVAKYRSMEGILPAHLRKKEKKD
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaacgacaattccacaaactccaaccgcaaacaaccgcccatctggctcaaacc
atgactcttttaagcatgaatgtggatgagcttaatcaggaaataatccgcgcgatggca
gaaaatcccgctttggttatgaaagaggagcgccgctgtcccggatgcgggcgattgctg
accagcaatcagatttgcccggtttgcagcaaacccaagaatccgggttcagatgaagcg
atagttttcctgtccccgcggaatgagataacttactcgaaatcatctacggatgaagaa
tatttttcggatgaaatatcaaatacggatgaggtcagcctggctgaatttatattgcgg
caaatcgcaatggatcttgagcaggaagaccgtatcattgccgcttacattctcaaccag
gtggatgaggatggttttttgcaagagagactggtggaaatcgccagttattatcatgtt
cccctatcacgtgttgaacatgtaaaaaatatgatccagcatgctgaaccgttaggtgtg
ggatccagctcaccggaagaggcattgctgatccaattggagatggttggtgagacccaa
aaagtgccgccatattactttgatattatcaaaggtggcttaagcatgctttccaaaaag
caatatccgcaaattgcgaaaacattgggaattagcagcagtgaggccgagaaagctatt
gagttcatcagcaagaatctgtatcctttcccagcgcgcgcacactggggcagtttccgc
atgcccagcgaagacaaaggccaggtttacaccagtccggatgtcattattaatttcatg
aatcacgacccaaatttgcctttgatggtggaaattatcaccccatcatatggaactttg
gatatcaacccattatttaaacaagccattaaacaatcttctgaggaaacaaaagaggac
ctgaaaccggacctcgagaaagcaaatttgctcattaagtgcatccagcagcgcaacaat
accatgcagcgtttgatggaaaagattgtgaatatgcaaaaagaattcatcgttgaaggc
gaaaaattcatccagccggtcacacgcgcagaaatctctaaagagctggaagtgcacgaa
tcgacgatttctcgcgcagtttccaataaatcggtgcagcttcccagcgggcagattata
cccatggacgtattctttgataaaagtctggggatcagggctaccatgcgggagtttatc
gaggcagaaaataaagacaaaccgctcagcgactcggatttggtcaaattattggaaaaa
gatggctacgaactggcgcgccggacggtggcgaagtaccgttccatggaaggtatcttg
cctgcgcatctccgcaagaaggaaaaaaaggattga
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