Pseudomonas sp. VLB120: PVLB_06955
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Entry
PVLB_06955 CDS
T02897
Name
(GenBank) DEAD-box ATP dependent DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVLB_06955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psv03019
]
PVLB_06955
03009 Ribosome biogenesis [BR:
psv03009
]
PVLB_06955
Enzymes [BR:
psv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVLB_06955
Messenger RNA biogenesis [BR:
psv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PVLB_06955
Ribosome biogenesis [BR:
psv03009
]
Prokaryotic type
rRNA helicases
PVLB_06955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AGZ34194
UniProt:
A0AA86ACP4
LinkDB
All DBs
Position
1559984..1561663
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AA seq
559 aa
AA seq
DB search
MTQETGGFAALELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPES
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTADLGCSPRAL
ASALLRKATNGQALDLAAVEREQPLVPSFTPRERSGERGDRGERSERGDRERRAPMPLAE
GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLSK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgctctcgaactcaatccgaacattgttgctgcc
gtactggctaccggctacgaagagccgtccgccattcagcaacagtcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgacgtgagcaagcgcgaaccgcaagccctgatcctt
gcgccaacccgtgagttggcgctgcaagtagctaccgcattcgaaacctacgccaagcag
atgccgggcgttaacgtcgtggccgtgtacggtggtgccccgatgggcccacaactgcgt
gccatccgtaacggcgcgcaaatcgtcgtcgctacccctggccgcctgtgcgaccacctg
cgccgcgacgagaaagtcctgtccaccgttcagtacctggtactggacgaagcggacgag
atgctcaagctgggcttcatggacgacctcgaagtgatcttcgacgccatccctgaatcg
cgccagaccgtgctgttctccgccaccctgccgtcttcgatccgcagcatcgccgagcgc
cacctgcgcgagccgaagcacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gatcaggcccacctgatggtccacgccgaccagaagatcccggctgtgctgcgtctgctg
gaagtggaagaattcgatgcgctgatcgccttcgtacgcaccaagcaagccaccctggac
ctggcctccgccctggaagccaagggctacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctcaaggatggccgtctggacatcgtcgtc
gccaccgacgtcgcggcccgtggtctggatgttccgcgcatcacccacgtattcaacgtg
gacatgccgtacgacccagagtcctacgttcaccgtatcggtcgtaccggccgtgctggc
cgcgatggccgtgcgctgctgctggttaccccgcgtgagcgtcgcatgctccaggtgatc
gaacgtgtaaccggtcagaaagtggccgaggcccgtctgccgaacgcgcaggccgtactc
gatgcccgcatcaagaagctgacttcgagcctggcgccgctggtggccgaagcggaagcc
acccatggcgaactgttcgaccgtctgaccgccgacctcggctgcagcccacgcgcactg
gcctcggccctgctgcgcaaggccaccaatggccaggctctggatctggcggctgtcgag
cgtgagcagccgctggtgccaagcttcaccccgcgtgagcgcagtggtgagcgtggcgac
cgtggtgagcgcagtgagcgtggtgaccgcgagcgtcgcgcgccgatgccgctggctgaa
ggtcgcgttcgttgccgtaccgcgttgggtgcccgtgacggtatcgccgccaagaacctg
ctgggtgcgatcctcaatgagggcggcttggctcgcgacgccatcggccgtatccaggtt
cgtgacagcttcagcctgatcgaactgccggaagacggcctggagcgtctgctgtccaag
ctcaaggacacccgtgtggcgggcaagcagctgaagctgcgccgctaccgcgaggactga
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