Pseudomonas syringae pv. tagetis: MME58_09630
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Entry
MME58_09630 CDS
T08245
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MME58_09630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyi03400
]
MME58_09630 (mfd)
Enzymes [BR:
psyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MME58_09630 (mfd)
DNA repair and recombination proteins [BR:
psyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MME58_09630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
DUF6732
Motif
Other DBs
NCBI-ProteinID:
UNB70456
LinkDB
All DBs
Position
complement(2115983..2119435)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPHLSAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPF
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGGGRERFPAQTLPDL
SIEAKASQPLAALSGFLDDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVDG
KDRLAITIAPLDEGLLLEQPALALIAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
ETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYL
PDVHTRLILYKRIANAADEEALKDLQVEMIDRFGLLPEPTKNLVRITLLKLHAEQLGIKK
IDGGPQGGRIEFAADTPVDPLTLIKLIQSQPNRYKFEGATLFKFLVPMERPEERFNTIEA
LLERLTPKTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgccagttctgcgtctaccgcatctttctgccgctgcaggcaaacaacactggggcaat
ctgcccggtgccgcactgagcctggccattgccgaggcagccagcgcagccaagcgcttc
accctgctcctgaccgccgacagccagagcgccgagcggctggaacaggagctgaagttt
tttgcgcccacgctgccggttctgcacttcccggattgggaaaccctgccctacgatctg
ttttcgccgcaccaggacatcatttcccagcgcatcgccagcctctatcgcctgccggag
ctggaacatggcgttttggtagtccccatcacgaccgccctacacagacttgcaccgacc
aaattcctgcttggcagcagtctggtgctggatgtcggccagaagctcgatgtggaggcg
atgcgtacgcgcctggaagccagcggctatcgctatgtggatacggtttacgagcatggc
gagttcaccgtgcgcggcgcactgatcgatctgttcccgatgggcagcaagctgccgttc
cgcatcgatctgttcgacgacgaaatcgaaacgctgcgcacgttcgatccggacacgcag
cgctccatcgacaaggtcgagtcggtacgcctgttgcctgcccgcgaatttccactgcag
aaagaggaagtcacgcgcttcaaggcgcgctttcgcgaacgcttcgatgtggattttcgg
cgcagcccgattttccaggacttgagcagcggtatcacaccagctggcatcgagtactac
attccgttgttcttcgaggaaacctcgaccctgttcgattaccttccgcaggacacccag
gtgttttccctgcctggaatcgaacaggccgcagaaaacttctggaacgacgtgcgcaac
cgctacgaagaacgccgagtcgatccagcccggccgctgttgccaccggccgagctgttt
ttaccggtggaagactgttttgcgcgcttgaaaaactggccgcgcgtggttgccagccaa
caggatgtcgacgccggtggcgggcgcgagcgttttccagcgcagaccttgccggacctg
tccattgaagccaaggccagtcagccattggcggcattgtctgggtttctcgatgatttc
cccggtcgcgtgctgttcactgccgagtccgccggacgccgggaagtgctgctggagttg
ctggaacgcctcaagctgcggccgaagactgtcgacagctggctggacttcgtcgacggc
aaggacagactggcaattaccattgcgccgcttgacgaaggcttgctgctggaacaaccg
gcgctggcgctgattgctgaaagcccattgttcggccagcgtgtcatgcagcgccgtcgt
cgcgaaaaacgcactgatggcggcaacaacgacgccgtcatcaagaaccttaccgaactg
cgcgaaggcgcgccggtggtgcacatcgaccatggcgtcggtcgctatctggggctggcg
acgctggaagtcgagaatcaggtcgccgaatttctgatgctggcctacgccgaggacgcc
aagctgtacgtcccggtcgccaacctgcacctgatcgcccgctacaccggcagcgacgac
gagaccgcgccgctgcaccggctgggttcggaaacctggcagaaggccaagcgcaaggct
gccgaacaggttcgcgacgtggcggccgaactgctggatatctacgcgcgccgggcagcc
cgcgagggttatgcctttgccgacccgaaagccgactacgccaccttcagcgcgggcttc
ccgttcgaagaaacgccggatcagcagaccaccatcgaagcggtacgcgccgacatgctg
gcacccaagccaatggatcgcctggtgtgtggcgacgtgggcttcggcaagaccgaagtg
gccatgcgtgccgcgttcattgccgtgcacggcgggcgtcaggtcgcaattctggtgccg
accaccctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccg
gtgacggtcgaagtgatgagccgcttcaaatcggctaaggaagtcaacgccgccgtggcc
gatctggccgagggcaagatcgacattgtcatcggcacgcacaaactgctgcaggatgac
gtcaagatcaagaatcttggtctggtaatcatcgacgaagaacaccgtttcggcgtacgt
cagaaagaacagctcaaggcgctgcgcagtgaggtcgatattttgaccctgaccgctacg
ccgatcccgcgtacccttaacatggcggtgtcgggcatgcgtgatctgtcgatcatcgcc
acgccaccggcgcgcaggctgtcggtgcgcacctttgtcatggagcagaacaagcccacg
atcaaggaagccctgctgcgcgagctattgcgcggcgggcaggtctattacctgcacaac
gacgtcaagaccatcgagaaatgcgcggcagacctggccgagctggtaccggaagcccgt
atcggcatcggccacgggcagatgcgcgagcgagagctcgaacaggtgatgagcgacttc
tatcacaagcgcttcaacgtgctgatcgcttcgaccatcatcgagaccggcatcgacgta
cccagtgccaacaccatcatcatcgaacgtgccgacaaattcggcctggcccagttgcac
cagctgcgcgggcgcgtcgggcgcagtcaccaccaggcctacgcctacctgctgaccccg
ccacgcaaacagatcactcccgacgccgaaaaacgtctggaagcgattgccaacacacag
gaccttggtgcgggctttgtgcttgccaccaacgaccttgagatccgtggcgcgggcgag
ttgctcggcgacggccagagcggccagatccaggcggtgggcttcaccctctatatggaa
atgctcgagcgtgcggtcaagtcgattcgcaagggcgaacagcccaatctcgatcagccg
ctgggcggcggaccggaaatcaacctgcgcgtgccggcactgatcccggaagactacctg
cccgacgtgcacacccgcctgattctctacaagcgcattgccaacgcggctgacgaagag
gccttgaaggatcttcaggtggaaatgatcgaccgtttcggcctgttgccggagccgacc
aagaacctagtgcgtatcacgctgctcaaattgcacgccgaacagctgggcatcaagaaa
atcgacggcggcccacaaggtggccgtatcgaattcgcggccgatacgccggttgaccca
ctgaccctgatcaagctgatccagagccagcccaaccgttacaagttcgaaggtgccacg
ctgttcaaattcctggtccccatggagcgcccggaagagcgcttcaacacgatcgaagcg
ctgcttgagcgcctgaccccgaaaactgcttga
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