Pseudomonas syringae pv. tagetis: MME58_16850
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Entry
MME58_16850 CDS
T08245
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyi03032
]
MME58_16850 (topA)
03400 DNA repair and recombination proteins [BR:
psyi03400
]
MME58_16850 (topA)
Enzymes [BR:
psyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MME58_16850 (topA)
DNA replication proteins [BR:
psyi03032
]
Prokaryotic type
DNA Topoisomerases
MME58_16850 (topA)
DNA repair and recombination proteins [BR:
psyi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MME58_16850 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UNB66880
LinkDB
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Position
complement(3808873..3811485)
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKDPAVKRGKAAAGE
GPVLTPKEKAQRQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRKLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIARVNAQQARRFLDR
VVGYMVSPLLWQKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAN
VRFEVARESGEAFKPLNETQAMAALAKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARDYIETEFGKKYLPEAPN
VYSSKEGAQEAHEAIRPSDVNTHPTKLAGMERDAERLYELIWRQFVACQMLPAQYLSTTV
TVAASDFELRAKGRILKFDGYTRALPQMAKPGDDDVLPDMAQGESLKLNKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTGRLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFRKKLDVAEAADGGMRANQPVMT
DIPCKVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLTPGDEIADDDEGESESRVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCTGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPECKNTRKLLKSGDAAPPKMDPVKMPELKCDKVDDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIAPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGSAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggtaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggcgagtgccgcaaaagatcctgccgtcaagcggggcaaggctgctgcgggcgaa
ggcccggtactgacgccgaaagaaaaggcgcagcgccagctggtctcgcgcatgggagtc
gacccggaacacggctggaaagccaagtacgagatccttccgggcaaggaaaaggtcatc
gaagagctgcgcaagctcgccaaggatgccgacaccatctatctcgcgacggacttggac
cgcgaaggggaggccatcgcctggcacctgcgcgaagccatcggtggggatgacagtcga
tacaagcgcgtggtgttcaacgaaatcaccaagaaagctatccaggaagcgttttccaag
cctggcgagctggacattgcacgagtcaacgctcagcaggcgcgtcggtttcttgaccgc
gttgtgggctacatggtctcgccgctgctctggcagaaagttgcccgtggcctttcagcc
gggcgggtgcagtcggttgcggtaaagctggtggtggagcgcgagcgtgaaatacgcgcg
ttcaaccctgaagagtactgggaaatccacgccgacctgggcactgccaagggtgccaac
gtgcgtttcgaagtggctcgtgaaagcggtgaagcgttcaagccgttgaacgaaacccag
gctatggcggcccttgcaaaactcaaggcgtccagctacagcatcgtcaagcgtgaagac
aagccgaccagcagcaagccttcggcaccgttcattacctcgactctgcagcaggcggcg
agcaatcgtctgggcttcggcgtaaagaagaccatgatgatggctcagcgcttgtatgag
gcaggctacatcacctatatgcgtaccgactcgaccaacctgtcggcggacgcggtgagc
atggcgcgtgactatatcgaaaccgagttcggcaagaagtacctgccagaggcacctaac
gtctacagcagcaaggagggcgcacaagaggctcacgaagcgattcgaccctccgacgtc
aacacccacccgaccaagctggcagggatggagcgtgacgccgagcggctttacgagttg
atctggcgtcagtttgtcgcctgccagatgctgccggcccaatacctgtcgaccaccgtt
acggtcgccgcgagcgatttcgaactgcgtgccaagggccgtattctcaagttcgatggt
tacacccgtgccttgccgcagatggccaagccgggcgacgatgacgttctgccggacatg
gcgcagggcgaatccttgaagctgaacaagctcgacccgagccagcacttcaccaagccg
cctgcgcgttactcggaagcgagcctggtcaaggagatggaaaaacgtggcattggccgc
ccgtcgacttatgcggcgatcatttcgaccatccaggaccgtggctacgtggcgttgcac
aaccgccgcttctactcggaaaagatgggcgacattgtcaccggacgtctgtccgaaagc
ttttccaacctgatggactacggcttcaccgccgggatggaagaaaacctcgatgacgtt
gctcagggtgagcgcgactggaagaacgtcctggacgagttctacggcgatttccgcaaa
aagctcgacgtggccgaggccgctgatggcggcatgcgtgccaaccagccagtgatgacc
gatatcccttgcaaggtgtgcggtcggccgatgcagatccgcactgcctctacgggtgtg
tttctgggttgttccggctacagtctgccacccaaggagcgttgcaaggcgactgtcaat
ctgactcccggcgatgagattgccgacgacgatgaaggcgagtctgagtcgcgggtgctg
cgcggcaaacatcgctgcccgatctgcagtacggcaatggacgcgtatctgctcgacgaa
aagcacaagctgcacatttgcggcaacaacccggactgcacggggtatgagatcgaggaa
ggcacttaccggatcaagggctacgaaggcccgagcctggagtgtgacaagtgcggcagc
gagatgcagctcaagaccggtcgtttcggcaagttctttggctgcaccaatcccgagtgc
aagaatacccgcaagttgctgaaaagcggcgacgcggcaccgcctaaaatggacccggtg
aagatgccggagctcaagtgcgacaaggtcgacgatacctacatactgcgtgacggcgct
tcgggtctgttcctggctgccagccagttcccgaagaaccgtgagacccgcgcaccgctg
gtcatcgagatcgcgccgcacaaggacgaaatcgatcccaagtatcattttctttgtgaa
gcgcctaagaaggacccggatggtcgtccggcagtgatccgctacagtcgcaagaccaaa
gagcagtatgtccagaccgaagtagagggcaaacctacaggctggcgcgcgttctacgac
ggcagcgcctggaaggtcgaagacaagcgctga
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