Psychrosphaera ytuae: J1N51_07325
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Entry
J1N51_07325 CDS
T07123
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
psym
Psychrosphaera ytuae
Brite
KEGG Orthology (KO) [BR:
psym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psym03019
]
J1N51_07325 (hrpB)
Enzymes [BR:
psym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J1N51_07325 (hrpB)
Messenger RNA biogenesis [BR:
psym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J1N51_07325 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
HA2_N
AAA_19
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QTH65331
UniProt:
A0A975DDZ0
LinkDB
All DBs
Position
complement(1669377..1671929)
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AA seq
850 aa
AA seq
DB search
MYSILETLKESLQQHPNLVLQADPGAGKSTVVPLELLKSGLFGDQKIIMLEPRRMAARAI
AHYLARQLGEAVGQSVGYRVKNDKKISSKTRLEIVTEGVLLRQLQSDPELEGVGLVIFDE
FHERTINADLSLLLTMEAQQILRDDLKVIVMSATIDTELVSKYIDDAPIIKCPGRVFPVA
VSYQGDSQQRLTEKVWKALQQALSQPGDVLVFLPGIADINRCLEYSKDRFTENFSSAQVE
QVEFLALHGSLPLEQQEKAISRSVDATRKVIFSTNIAETSLTIEGVKWVIDSGLEKRLVF
DPASGMSKLTTLAISKASAEQRKGRAGRVSEGNCIRLWSETKHNSLADFQEEEILNADLS
DAILELANAGHSNFEDIPWLTPPPKAHFDSTRDVLERLGLITTDGKITSLGKQASQLGVH
PRLAKMRLAAATPKEVTLANALAALLSERDFLVRGDSADLSLRLNILLEALATNKRAFKQ
GSSHSIKANTLRNVIADYHALSRKSPDDFELKQFNDIDLIDTAGYLLLQAFPERLAQRRN
INSHRYKLANGRGVALDDNDPLVQAEYLVVTDCDAERQEGRIFSALEVSKTLILERLSES
LEEQVEYQLSDGSKGSGSKKVIGREVRRYHQLIIEERKTDSVPREFLMDCVQSLIKTDHK
EILNWTKACDAWLTRVEWLGEHLSSFPSMTLTSVLDQADEWLLPYISNISSIAEVKQLDV
FPLLTSLISYGQSKILNKEAPTHYITPGGKKVPILYCEHQGPTVSVVLQEVFGEQGSPRL
AGNTVPLRFELLSPAKRPIQITSDLAQFWSGSYHEVAKDMRAKYPKHRWPEDPANELAGA
SLKRTFNSNR
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atttattcaattttagagacgctgaaggaatctcttcagcagcatccaaacctggtttta
caagccgatcccggcgcgggtaagtcgacggttgtgccgttggaattactcaaatcagga
ttgtttggcgatcaaaaaattataatgctcgagccccgtcgtatggcggcccgcgcaatt
gcccattatcttgcaagacaactcggggaggcggtcgggcaatccgttggttatcgagtt
aaaaacgacaaaaaaatatcatcaaaaactcgactcgaaatcgtcaccgaaggggtatta
cttcgacagttacaatctgatcccgagcttgaaggcgtggggttagtgatctttgatgaa
tttcacgaacggaccataaatgctgacttatctttgttgctgacaatggaagcgcaacag
atactcagagatgatttaaaagtcattgttatgtcagcaacgatagatacagagttagtc
tctaaatacatcgatgacgcaccaattataaaatgcccaggtcgagtgtttcccgtcgct
gttagttatcaaggtgatagccagcaacgtttgaccgaaaaggtgtggaaggctttacaa
caggcattgtctcaaccgggtgatgtgttggtatttctgccgggtatcgctgatatcaat
cgatgcttggagtattctaaagaccgcttcacggagaacttttcgagtgcacaagttgag
caagttgagtttttggcattgcatggttcattgccattagagcaacaagaaaaagctatc
tctcgcagtgttgacgcaactcgaaaagtgattttttctaccaacatcgccgaaaccagt
ttaaccattgaaggcgttaaatgggttattgattcgggtctagaaaaaaggttggtattt
gatcccgctagtggcatgtccaaacttactactcttgcgatttcgaaagcctctgcagag
caacgcaaaggccgagcgggccgagtctcagaaggcaactgcattcgcctttggagcgaa
accaagcacaatagtcttgcagactttcaagaagaagaaatactcaacgccgatttgtcc
gatgccatacttgagctagcaaatgctggtcatagcaactttgaagatattccatggtta
acgccaccgcctaaagctcattttgattcaactcgtgatgttttagagcgcttggggctg
ataacaacagacggtaaaatcacgtccttgggtaaacaagcaagccagctgggcgttcat
ccacgattagccaaaatgcgcctagcagcggcaacacctaaagaggttactttggccaat
gcgttagcggcgttattatcagagcgcgattttttggtaagaggcgatagtgcagatttg
tccttgcgtttgaatatattgctagaagcgctcgctactaataaacgggctttcaaacaa
ggttcatcgcatagcattaaagccaacactttaagaaatgtcatcgctgactaccatgcg
ttatcacgtaaatcacccgatgactttgaacttaaacagttcaacgatattgacctaatc
gatacagctggctatctgctgttgcaggcttttccagaacgattggctcagcggcgtaac
atcaacagtcacagatacaaactagcaaatggccgaggagtggcccttgatgataatgac
ccgctagtccaagctgaatatcttgtggtcaccgattgtgatgcagagcgtcaagaaggc
cgcattttcagtgctttggaagtgagtaaaacgcttattcttgaacgtttatctgagagt
ttagaggaacaagttgagtatcagctgagtgatggctcgaaaggcagtggcagcaaaaaa
gtaatagggcgagaggttcgtcgttaccatcaactcatcattgaagagcgcaaaaccgat
agcgtgccgcgtgagtttttaatggattgtgtacagtctttaataaaaacagaccacaaa
gaaatactaaattggactaaagcctgtgacgcttggttgacccgtgttgagtggttaggt
gagcatttatcttcatttccgtccatgactttaacctcagtactggatcaggctgacgag
tggttgttaccttatatttctaatatcagtagtattgcagaagttaaacagcttgatgta
ttcccgttattgacctctttgataagttacggccaaagcaaaatattaaataaagaagca
ccgacccattacatcaccccaggtggtaaaaaagtgcccattctgtactgcgagcatcaa
ggtccaacggtgtctgttgtcttgcaggaggtgtttggtgaacaagggtctccgcgtttg
gcagggaatacagtaccattgcggtttgagttgttatcaccagcgaaaaggccgattcaa
attaccagtgacctggcgcaattttggagcggctcttaccatgaagtagccaaagatatg
cgggcaaaatatccgaagcaccgctggccggaagacccggctaatgagctagcgggcgct
tcactaaagcgcacttttaactcgaatcgataa
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