Psychroserpens sp. NJDZ02: E9099_16770
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Entry
E9099_16770 CDS
T05945
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyn
Psychroserpens sp. NJDZ02
Pathway
psyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E9099_16770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyn03019
]
E9099_16770
03009 Ribosome biogenesis [BR:
psyn03009
]
E9099_16770
Enzymes [BR:
psyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E9099_16770
Messenger RNA biogenesis [BR:
psyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E9099_16770
Ribosome biogenesis [BR:
psyn03009
]
Prokaryotic type
rRNA helicases
E9099_16770
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
QCE42998
UniProt:
A0A4P7WZG8
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All DBs
Position
complement(3802741..3803859)
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AA seq
372 aa
AA seq
DB search
MMTFKDLGLDKNYIKALKELGIKNPTEIQSQAIPVLLKKSTDLIGLAQTGTGKTAAFGLP
LLHKINPKKDTVQALIIAPTRELVQQIKKQLFKYIKYNDAKIFLEGVYGGEKIDIQLKNV
ARTTHIIVATPGRLVDLVERGAVNLADVKTIVLDEADEMLSMGFKPDLTTILKSVTGPKN
TWLFSATMSDALKDIVKRYIADEAIRLEIDRTSIVNQNISHYFVETSVHEKASTIIRLLE
DREDQRGIIFTKTKAGAQALRHQLETEGFNVGALEGDMQQRDRDKVMRAFKNTTLQLLIS
TDVSARGIDVNDLAFVMHHQLPEHIEYYTHRSGRTARAGKKGESIALVLSSERNDLKKVE
STLGIKFKQLSV
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
attatgacttttaaagacttaggtttagataaaaattatataaaagcactaaaggaatta
gggattaaaaatcctactgaaattcaatctcaggccatacctgtgttacttaaaaagtca
accgatttaattggtttggctcaaacgggaacaggtaaaaccgctgcttttggattacct
ttattacataaaattaatcctaaaaaggataccgttcaggcgcttatcattgcacctaca
agagaattggtacaacaaataaagaagcagttatttaagtatatcaagtataacgatgct
aaaatatttttagaaggggtttatggaggtgaaaaaattgatattcaacttaaaaatgta
gccagaacaacacatattatagtggcaactccgggtcgtttggtcgatttagtagagcgc
ggtgctgtaaacttggcggatgttaaaacaattgttttagatgaagctgatgaaatgtta
agtatggggtttaaacctgatttgacaacaattttaaaatcagtaacaggaccaaaaaac
acgtggttattcagtgcaaccatgtctgatgctttaaaagatattgtaaagcgttatatc
gcagatgaagctattcgtttagagattgatagaacaagtattgttaatcaaaatatctcg
cattattttgtagaaacttcagtgcatgagaaagcttcaacgatcattcgattattagaa
gatagagaagaccaacgtggtattattttcactaaaacaaaagcaggtgcgcaagcatta
agacatcaattagaaaccgaaggattcaacgttggtgctttagaaggggatatgcaacaa
agggatcgagataaagtaatgcgtgcgtttaaaaacactacgttacagttgttaatctct
actgatgtatctgcaagaggaattgatgttaacgatttagcttttgtaatgcaccatcag
ttaccagagcatatagagtattatacacacagaagtggacgtacagccagagctggtaaa
aaaggagaatctatcgctcttgttttgagtagtgagcgtaatgaccttaaaaaggttgaa
tctactttaggtattaaatttaaacaattatcggtttaa
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