Pseudomonas taetrolens: NCTC10697_01333
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Entry
NCTC10697_01333 CDS
T08085
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ptae
Pseudomonas taetrolens
Brite
KEGG Orthology (KO) [BR:
ptae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptae03032
]
NCTC10697_01333 (topA)
03400 DNA repair and recombination proteins [BR:
ptae03400
]
NCTC10697_01333 (topA)
Enzymes [BR:
ptae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC10697_01333 (topA)
DNA replication proteins [BR:
ptae03032
]
Prokaryotic type
DNA Topoisomerases
NCTC10697_01333 (topA)
DNA repair and recombination proteins [BR:
ptae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC10697_01333 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
SQF85582
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All DBs
Position
1:1366745..1369372
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AA seq
875 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKAQKQLISRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSRPGELDINRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAK
VRFDVAREKGEAFKPLNEAQAMAALEKLKSSSYTIAKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVEMARTYIEGEFGASYLPPAPN
VYSSKEGAQEAHEAIRPSDVNMHPTKLSGMERDAERLYELIWRQFVACQMLPAKYLSTTV
SVAAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVLKLIDLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSDLMDYGFTAGMEENLDDVAHGERDWKNVLDEFYGDFKKKLEVAAAPDGGMRANQPVMT
DIPCKECGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
LGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCTGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGEAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWRAFYDGNSWKVEDKRKEKDA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagaaccggctgccaagcgtggcaaggcagcggcgggcgaa
gcgccggccctgtcgccaaaagagaaggctcaaaaacagctgatctcgcgcatgggtgtc
gatcccgatcatggctggaaagccaagtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggcgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaagcgatccaggaagccttctccagg
ccgggcgagctggacatcaatcgtgtcaacgcccagcaggcgcgtcggttcctcgatcgc
gtagtgggttacatggtttcgccattgctgtgggcaaaaattgcccgcggcttgtcggct
ggccgtgtgcaatcggttgcagtgaagctggtggtggagcgcgaacgcgaaattcgtgcc
ttcaaccctgaagagtactgggaaatccatgccgacctgggcaccgccaagggtgccaag
gtgcgttttgatgtggcccgtgaaaaaggcgaggccttcaagccgctgaacgaagcacag
gccatggcggcgctggagaagctcaagagctccagctataccatcgccaaacgtgaagac
aagccgaccagcagcaaaccgtcggcgccgttcatcacgtccaccttgcagcaggccgcc
agtaatcgcttgggctttggtgtgaagaaaaccatgatgatggcccagcgcttgtatgaa
gcgggctacatcacgtacatgcgtaccgactccaccaacctttcggccgatgcggtcgaa
atggcgcgtacttatattgaaggtgagttcggcgcatcgtacctgccgcctgctccgaac
gtgtacagcagcaaggaaggcgcccaagaggctcacgaagcgattcgtccttctgacgtc
aacatgcatccgaccaagctgtcgggcatggagcgtgacgctgagcgcctctacgagctg
atctggcgccagttcgtggcgtgccagatgttgccggccaagtatttgtcgaccaccgtc
agcgtggctgctggcgactttgagctgcgtgccaagggccgcatcctgaagttcgacggt
tacacccgtgtcatgccgcaaatcgccaagccgggcgacgacgatgtgttgccggacatg
gcgcagggcgacgtgctgaaattgatcgatctcgatcctagccagcacttcaccaagccg
cctgcacgttactccgaagccagcctggtaaaagagatggaaaaacgcggtatcggtcgt
ccttcgacctatgcggcaatcatctcgaccattcaggatcgcggttacgtggcgctgcac
aaccgccgtttctactccgagaaaatgggcgatatcgtcaccgagcgcttgtccgagagc
ttctctgacctgatggactacggcttcaccgccggcatggaagaaaatctcgatgacgtc
gcgcacggtgagcgcgactggaaaaatgtgctggacgagttttacggcgacttcaaaaag
aaactcgaagttgcagccgctccagatggcggcatgcgtgccaatcagccggtgatgact
gatattccgtgcaaggaatgcggtcgtccaatgcagattcgtacggcatcgactggtgtt
ttcctcgggtgttcgggctacagcctgccgcccaaagagcgctgcaaggcgacggtcaac
ctggtgccgggcgacgaaatcgctgctgacgatgaaggcgagtcagaatcgctggtgctg
ttgggcaagcatcgctgcccgatttgcagcactgcgatggatgcctatctgctggatgag
aagcacaagctgcacatctgcggtaacaacccggattgcaccggctacgaaatcgaagaa
ggcagctaccgcatcaagggttacgaagggcctagcctggagtgcgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaatgccgagtgc
aagaacacccgcaagctgttgaaaagcggtgaagcggcgccgccgaaaatggacccggtg
aaaatgccggagctcaagtgcgagaaggttaacgatacgtacattctgcgtgacggtgct
tcggggttgttcctggctgccagtcaattcccgaaaaaccgtgagacccgtgcgcctttg
gtgatcgaaattgttccgcacaaggacgaaattgaccccaagtaccacttcttgtgtgaa
gcaccgaaaaaagacccggatggccgtccagccgtgattcgctacagtcgcaaaaccaaa
gagcagtacgtgcagactgaagtggatggcaagccgaccggctggcgtgcgttctatgac
ggtaacagctggaaggttgaagacaagcgtaaggaaaaagacgcttga
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