Pseudomonas taetrolens: NCTC10697_01341
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Entry
NCTC10697_01341 CDS
T08085
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptae
Pseudomonas taetrolens
Pathway
ptae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10697_01341 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptae03400
]
NCTC10697_01341 (mfd)
Enzymes [BR:
ptae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10697_01341 (mfd)
DNA repair and recombination proteins [BR:
ptae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC10697_01341 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
SQF85590
LinkDB
All DBs
Position
1:complement(1376628..1380077)
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AA seq
1149 aa
AA seq
DB search
MPVLRLPKLPATAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELRF
FAPELPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGVLVVPITTALHRLAPT
KFLLGSNLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESVRLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPGDTQVFSLPGIENAAEHFWSDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVVSQDDLDTDTRRERFPARPLPNL
AIEAKANQPLAALSGFIEQFDGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KHRLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYQGLATLEVDNQVAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDE
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQTTIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEINAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNNSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAQKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYLP
DVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRITLLKLQAEHLGIKKV
DAGPQGGRIEFAADTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTIEAL
FERLAPKSS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgaaactccctgccaccgcaggtaaacagcattggggcaac
ctgcccggtgccgccctgagcctcgcgattgccgaggccgccagcgccgccaagcgcttc
accttactcctgacagccgacagccaaagcgccgaacgcctggagcaggagctgcggttt
ttcgcgcccgaattgccagtgctgcatttccccgactgggaaacgctgccctacgacctg
ttctcgccccaccaggacatcatttcccagcgcattgccagcctgtatcgactccccgaa
ctcgatcatggcgttttggtagtacctatcaccacggccctacatcgcctggcaccgacc
aaatttctgctcggcagcaacctggtcctggacatcggccaaaagctggacgtggagcaa
atgcgcacccggcttgaggccagcggttatcgctgcgtcgatacggtctacgaacacggc
gagttcgccgttcgcggcgcattgatcgacctgttcccgatgggcagcaaactgccctac
cggattgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggaaaaccag
cgctcgatcgacaaggtcgaatcggtgcgattgctgccggcacgcgaattccccctgcaa
aaagatgccgtgacccgcttcaaggctcgctttcgagagcgctttgatgtcgacttccgc
cgttgcccgattttccaggacctgagcagcgggatcacaccggccggcatcgagtattac
ctgccgttgtttttcgatgaaacctcgaccctgttcgactacttgccgggcgatacccag
gtgttttccttgccaggtatcgagaacgcggcggagcatttctggtcagacgtgcgcaac
cgctatgaagaacggcgcgttgacccgtcacgccccttgctgccgcccgccgagctgttt
ctcccggtcgaagactgcttcgcccggctgaaaaactggccacgggttgtagtcagccag
gacgatctggacaccgacacccgccgtgagcgcttccccgcccgaccgctgccgaatctt
gcgatcgaggccaaggccaatcagccactggccgccttgtcgggctttatcgagcagttt
gatggtcgcgtgctgttcaccgccgaatcggccggtcgccgcgaggtgctgctggagctg
cttgaacgcctcaagctgcgcccgaaaacggtcgacagctggcccgatttcgttgccagc
aaacatcgcctggccatcaccattgccccgctggatgagggcctgctgctcgatgacccg
gcactggcactgattgccgaaagccctctgttcggtcagcgggtgatgcagcgccgacgc
cgcgaaaagcgcgctgacgccaataacgatgccgtgatcaaaaacctcaccgagctgcgc
gaaggcgcaccggtggtgcatatagaccacggtgtcggccgctatcaagggctggcaacc
ctggaagtcgacaaccaggtggccgagttcctcaccctggaatacgccgaaggcgccaag
ctttatgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagtgacgatgag
cttgcgccactgcaccgcctgggctcggaaacctggcaaaaagccaagcgcaaggccgcc
gaacaggtacgcgatgtcgccgccgagctgctcgacatctatgcccgtcgcgccgcccgc
gaaggctacgcctttgctgaccccaaggctgattacgcaaccttcagcgccggcttcccg
tttgaagaaacacccgaccagcagaccaccatcgaagccgtgcgcgaagacatgctctcg
cccaagccgatggatcggctggtgtgcggcgacgtgggcttcggcaaaaccgaagtggcc
atgcgcgcggccttcattgccgtgcatggcggtcgccaggtagccattctggtgcccacc
accctgctcgcccaacagcattacaacagtttccgcgaccgctttgccgactggccggta
acggttgaagtgatgagccgcttcaagtctgccaaagagatcaatgccgccgtcgccgat
ttggccgagggcaagatcgacatcgtgatcggcacccacaagctgctgcaagacgacgtc
aaaatcaaaaacctgggcctcgtgatcatcgacgaagaacaccgcttcggcgttcgccag
aaagaacagctcaaggccctgcgcagtgaagtcgatatcctgacactcaccgcaacaccg
atcccgcgcacattgaacatggccgtgtcaggcatgcgcgacctgtcgatcattgccacg
ccacctgcgcgccgattgtcggtgcggacctttgtcatggagcaaaacaacagcacggtc
aaagaggccctgctgcgtgagttgctgcgtggcggccaggtttactatctgcacaacgac
gtcaagaccatcgagaaatgcgccgccgagctggccgaactggtaccggaagcccggatc
ggcatcgggcacggccagatgcgtgaacgcgaactcgaacaggtgatgagcgatttctat
cacaagcgcttcaatgtgctgatcgcctcgaccatcattgaaaccggcatcgacgtcccc
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcagctacaccag
ttgcgcggccgcgtcggacgcagtcaccaccaggcgtatgcctatctgctgacgccgccg
cgccagcaaattaccggagatgcgcaaaagcgtctcgaagccatcgccaacacccaggat
ctgggtgcaggctttgtgcttgccaccaacgacctcgaaatccggggcgcgggcgagctg
ctaggtgacggccagagcggccagatccaggcggtgggttttaccctgtacatggagatg
ctcgaacgcgcggtgaagtcgatccgcaagggcgaacagcccaaccttgaccagccactg
ggtggcggcccggaaatcaacttgcgcgtaccggcgttgattcctgaagcctacctgccc
gatgttcatgcccgactgatcctttacaagcgcattgcgtccgccagcgatgaagaaggc
ctcaaggatctgcaggtcgagatgatcgaccgcttcggcctgctgccggaaccgaccaaa
aacctggtgcgcatcaccctgctcaaattgcaggccgagcatctgggcatcaaaaaagtc
gatgccggcccgcaaggcgggcggattgagtttgcggccgacacgccggttgacccactg
gtgctgatcaaactgattcagggtcagcccaaccgttacaaattcgaaggcgcgacgcta
ttcaagttcatggtgcccatggagcgcgcggaagaacgtttcaataccattgaagccctt
tttgaacgcctggcgccgaagtcgtcctga
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integrated database retrieval system
