Pelotomaculum thermopropionicum: PTH_1977
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Entry
PTH_1977 CDS
T00519
Symbol
Nei
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pth
Pelotomaculum thermopropionicum
Pathway
pth03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PTH_1977 (Nei)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pth03400
]
PTH_1977 (Nei)
Enzymes [BR:
pth01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PTH_1977 (Nei)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PTH_1977 (Nei)
DNA repair and recombination proteins [BR:
pth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PTH_1977 (Nei)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
zinc-ribbons_6
Ribosomal_S13
zf-TFIIB
Auto_anti-p27
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
BAF60158
UniProt:
A5D0T6
LinkDB
All DBs
Position
2093192..2094022
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AA seq
276 aa
AA seq
DB search
MPELPEVETVRRTLQAKLPGLKITGVEVLLPKVIRSPELSEFKETIADKKILKVGRRGKY
LLINLSEGYTLAVHLRMTGRLVYCAGQDPPARHTHVIFNLSNGCQLHFADMRQFGRIWLV
PTDALDGLKGIKELGVEPLEELFTREFLKKELRRRHARIKPLLLDQTFIAGLGNIYADEA
LHRARINPERLATTLTPREIARLYRAIRDLLQEGIENRGTTVRDFIDGNGQAGNYQEFLQ
VYNREGKPCPRCGDKIAKKKVGGRSSYYCPTCQKVK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctcccggaagtggagaccgtcagacgaacgctccaggccaaactgccaggc
ttaaagattaccggcgttgaagtgctcctgccaaaagtaatccgaagcccggaattaagc
gaattcaaagaaacaattgcggataaaaaaatattgaaggtcggcaggcggggcaaatac
ctgctgatcaacctcagcgaaggctataccctcgccgttcacctgcgcatgaccggcagg
ctggtttattgtgcgggccaggatcccccggccaggcacacccacgtcatttttaacttg
agcaacggctgccagttgcactttgcggacatgaggcaattcggccggatatggctggtg
cccacggacgccctggacggcctgaagggcataaaggagttgggcgttgagcccctggaa
gaactgttcaccagggagttccttaaaaaagaactgcgccgcaggcacgcgcggatcaag
ccgctgctcctcgaccagaccttcattgccgggctgggcaacatttatgccgacgaggct
ctgcaccgggccaggataaacccggagcggctggccaccacccttaccccccgcgaaata
gcacgcctttatcgtgccatccgcgacctcctccaggaaggcattgaaaacaggggtacc
accgtgcgcgacttcatcgacgggaacggccaggcgggcaactaccaggagttcctgcag
gtttataaccgcgaaggcaagccctgcccccgctgcggcgacaaaatagcaaaaaaaaag
gtgggcggccgcagttcctattactgcccgacctgccagaaagtaaaatag
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