Pseudomonas tolaasii: I7845_07730
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Entry
I7845_07730 CDS
T08975
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptol
Pseudomonas tolaasii
Pathway
ptol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I7845_07730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptol03400
]
I7845_07730 (mfd)
Enzymes [BR:
ptol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I7845_07730 (mfd)
DNA repair and recombination proteins [BR:
ptol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I7845_07730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
QXQ20304
LinkDB
All DBs
Position
complement(1716363..1719812)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEHMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVESGAGRERFPAQTLPDL
AIQAKANQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccagagcgccgagcggctggagcaggagctgagcttc
ttcgccccggatttgccggtgctgcatttccccgactgggaaaccctgccctacgacctg
ttctcaccgcatcaggacatcatttcccagcgcatcgccagcctgtaccgcctgccggaa
ctggcgcacggcgtgctggtggtgccgatcaccaccgcgctgcatcgcctggcgccgacc
aagttcctgctcggcagcagcctggtgctggacgtcggccagaagctcgacgtcgagcac
atgcgcacacgcctggaagccagcggctaccgctgcgtcgacacggtgtacgaacacggt
gaattcgccgtccgtggtgccttgatcgacctgttcccgatgggcagtaaattgccctac
cgcatcgacctgttcgatgacgaaattgaaacactgcgcaccttcgacccggagaaccag
cgctccatcgataaagtggagtcggtcaagctgttgcccgcgcgcgagttcccgctgcaa
aaagacgccgtcacgcgcttcaaggcgcgctttcgtgaacgctttgacgtggacttccgc
cgctgcccgatctttcaggatttaagcagcgggattacaccggccggtatcgagtactac
ttgccgctgttctttgatgaaacgtccacgctgttcgattacctgccccaggacacccag
gtgttctcgctgccgggcattgagcaggcggcggaaaacttctggaacgacgtgcgcaac
cgctatgaagagcgccgcgtcgatccgtcccgtcctttgttgccgcccgccgagctgttc
ctgccggtggaagactgctttgcgcgcctcaaaagctggccgcgtgtggtcgccagccag
caggacgtggaaagcggtgccgggcgcgagcgctttcccgcgcaaacgctgccggacctg
gcgattcaggccaaggccaaccagccactggaagcgctgtcgaatttcctcggcgacttc
cccggccgtgtgctgttcaccgccgaatccgccggccgccgtgaagtgctgctggaactg
ctggaacgcctgaagctgcgcccgaaaaccgtcgacagctggccggattttgtcgcgagc
aaggaccgcctggcgatcaccatcgcgccactggatgaaggcctgctgctggacgacccg
gctctggcactgattgccgagagcccgctgttcggccagcgcgtgatgcagcgccggcgc
cgtgaaaaacgtgccgatgccaacaacgacgcagtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtgggccgctacctcggtctgcaaacc
ctggagatcgataaccaggccgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgccggtggccaacctgcacttgatcgcgcgctacaccggcagcgacgacgcc
ctggcgccgttgcaccgcctgggctccgaaacctggcagaaagccaagcgcaaagccgcc
gaacaggtgcgcgacgtggccgccgagttgctcgacatctatgcccgccgcgctgcgcgc
gagggctacgcgttcgccgacccgaaagccgattacgccaccttcagcgccggtttcgcc
ttcgaagaaaccccggatcagcaaaccaccatcgaagcggtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgcggcgacgtgggcttcggcaagaccgaggtggcc
atgcgcgccgccttcatcgcggtacacggtggcaagcaagtggcgattctggtgcccacc
accctgctcgcccagcagcattacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaagtgatgagccgcttcaagtccgccaaggaagtgaacgccgccgtcgccgat
ttggccgaaggcaagatcgacatcgtgatcggcacgcacaagctgctgtccgatgacgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgtttcggcgtgcgccag
aaagaacagctcaaggccttgcgcagcgaagtcgacatcctcaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcattgccacg
ccgccggcacgccgcctgtcggtgcgcaccttcgtgatggagcagaacaaaagcacggtc
aaggaagcgctgctgcgcgaattgctgcgcggcgggcaggtgtactacctgcacaacgac
gtgaaaaccatcgaaaaatgtgccgctgacctcgccgagctggtgccggaggcgcgaatc
gccatcggccacgggcagatgcgcgagcgtgaactcgaacaggtgatgagcgacttctat
cacaagcgtttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcccagttgcaccag
ctgcgtggccgggttggccgcagtcaccaccaggcctacgcctacctgctcacgccaccg
cgccagcaaatcaccggcgacgccgagaaacgcctggaagccatcgccaacacccaggac
ctcggcgccggctttgttttggccaccaacgacctggaaatccgtggcgccggggagttg
ctgggcgacggccagagcgggcaaatccaggcggtgggcttcaccctttatatggaaatg
cttgagcgcgcggtgaaagccatccgcaaaggcgagcaaccgaacctcgaccagccgctg
ggcggtggcccggaaatcaacctgcgtttgccggcgctgattcccgaagactacctgccc
gacgtgcacgcgcggctgatcctgtacaagcgcatcgcctcggccaccgacgaagaaggc
ttaaaagacctgcaggtggaaatgatcgaccgcttcggcctgttgccggaaccgaccaaa
aacctggtgcgcctgaccctgcttaaattgcaggccgagcagctgggtatcaagaaggtc
gacgccgggccgcagggcgggcgcattgagttcgaagcgcaaacgccggtggaccctctg
gtactgatcaagctgattcagggccagcccaaccgctataagtttgaaggggctacgctg
ttcaaattcatggtgccgatggaacgtgccgaagaacgctttaataccctggaggcgctg
tttgagcgcctcatcccgaaatccgcttga
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