Pseudomonas tolaasii: I7845_13375
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Entry
I7845_13375 CDS
T08975
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptol
Pseudomonas tolaasii
Pathway
ptol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I7845_13375 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptol03400
]
I7845_13375 (ligD)
Enzymes [BR:
ptol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I7845_13375 (ligD)
DNA repair and recombination proteins [BR:
ptol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I7845_13375 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXQ21354
LinkDB
All DBs
Position
complement(3015007..3017490)
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AA seq
827 aa
AA seq
DB search
MPKPLSEYNRKRDFKVTAEPAGKAPAGRRKAQALSFVIQKHDARNLHYDFRLELDGVLKS
WAVPKGPSLDPTQKRLAVHVEDHPLSYGSFEGNIAPGQYGAGDVIVWDRGVWQPHDDPHQ
AYAAGKLKFTLIGEKLAGDWALVRTRLKGSGDKEQWLLIKEKDDQARPATDYDIVEAQPK
SVLSDATVGKPKARAKSRARPRKAVADLPEHFSPQLAMLVDQAPDGDWHYEIKFDGYRML
ARIQGGEVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNA
FDIGRSLDIVYYLFDAPFLDGQDQRKAPVEERRAALKSALSGSRSKLLRFSEAFVANQRD
IFESACDLALEGVIGKRAGSPYASTRNADWIKLKCRLRQEFVIVGYTFPKGSRSGFGALL
LAVNDDSGLVYAGRVGTGFDQASLDTIYAQLKPLERKTSPLEKPLTSAQTRGVHWVEPHL
VGEAHFAEWTREGVVRQASFIALRTDKAVAQIIHEQPRTAKSLKPAKARNTGNEVTVTHP
ERVIDPQSGTQKQQLASFYAEISEWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIP
HIKQLDQTLDPAHARLMEIDTVAALLGAVQMGTVELHTWGATADKIETPDLFVLDLDPDP
ALPWKTMLEAAQLTLSVLDELGLDAFVKTSGGKGLHIIVPLARRDGWDTVKAFAKAIAQF
MTEQLPERFTATSGPKNRVGKIFVDYLRNARGASTVAAYSVRARPGLPVSVPVSREELKD
VRSAQQWTIANLLQRLRGLKADPWAGYANRQKISKKMWDRLGAQPPQ
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacccttgagcgagtacaaccgcaagcgcgatttcaaggtcaccgccgaacct
gcgggcaaggcgcccgccggcaggcgcaaggcgcaggctttatcgttcgtgatccagaag
cacgacgcgcgcaacctgcactatgactttcgcctggaactcgatggcgttctcaaaagc
tgggcggtacccaagggccccagcctggacccgacgcaaaagcgcctggcggtgcacgtc
gaggaccaccccctgagttacgggagtttcgagggcaatatcgcaccgggacaatacggc
gccggcgacgtgatcgtatgggaccggggcgtgtggcagccccatgacgatccgcaccag
gcgtacgccgcgggtaaactcaaatttaccctgatcggcgaaaagctggccggcgactgg
gctctggtacgcactcgcctcaagggcagcggcgacaaggaacaatggctgctgatcaag
gaaaaggacgatcaggcccgccccgccaccgattacgacatcgtcgaggcccagccgaaa
agcgtgttgagcgacgccaccgtcggcaagcccaaggcacgggccaagtcgcgggccagg
ccgcgcaaagccgttgccgacctgcccgagcacttcagtccgcaactggcgatgctggtg
gaccaggcgcccgacggcgattggcactacgagatcaaattcgacggctaccgcatgctc
gcgcgcattcagggcggtgaagttcgcctgttcacgcgcaacggccacgactggaccgag
cgcctgccgcgccaggtcaaggcgctgcaggcgctcaagctcaaggacagctggctggat
ggcgaagtggtcagcctgaacggggacggcttgccggattttcaggcgctgcaaaatgca
ttcgatatcggccgcagcctggacatcgtgtactacctgtttgacgcgcccttcctcgac
gggcaagaccagcgcaaagccccggtggaagaacgccgcgcggcgctcaaatcggcactt
tccggcagccgcagtaaactgctgcggttttccgaagcgtttgtggccaaccagcgcgat
atctttgaaagcgcctgcgacctggcgcttgaaggcgtgatcggcaagcgcgcgggcagc
ccgtatgcgtccacgcgcaatgccgactggatcaagctcaagtgccgcttgcgccaggaa
ttcgtcatcgtcggctacacatttcccaaaggctcgcgcagcggtttcggcgccctgctg
ctggcagtcaatgacgattccgggctggtgtatgccgggcgcgtgggcaccgggtttgat
caggcctcgcttgacaccatttacgcgcaattgaagccgctggaacgcaagacctcgccc
ctggaaaagccgctgaccagcgcccagacgcgcggcgtgcactgggtggaaccgcacctg
gtcggcgaagcgcactttgccgaatggacccgtgaaggcgtggtgcgccaagcctcgttc
attgccttgcgcactgacaaggccgtcgcgcagatcattcatgaacaaccgcgtacggcc
aaatcgctcaagcctgcgaaggcgcgcaataccggcaatgaggtgacggtcacgcacccc
gagcgtgtgatcgacccgcaaagcggcacgcaaaagcagcaactggcgtcgttttacgcc
gagatcagtgagtggatcctgccctttctgcgccaccgcccggtgtcgctgctgcgcgcg
ccggaaggcattgagggcgagcaattctttcaaaaacactccgagcgtctggccattccc
catatcaaacagctggaccagacgctggaccccgctcacgcgcgcctgatggagatcgac
accgtcgccgcgctgctcggtgccgtgcagatgggcacggtggaactgcacacctggggc
gccaccgcggacaagatagaaacgcccgacctgttcgtactggacctcgacccggacccg
gcgctgccatggaaaaccatgctggaagctgcgcaactgaccctctcggtcctggatgaa
ttgggcctggacgcctttgtcaaaaccagcggcggcaagggcttgcacatcatcgtgccg
ctggcgcggcgcgatggctgggacacggtcaaagccttcgccaaagccatcgcgcagttt
atgaccgagcaattacccgagcgctttactgccacctccggtcccaaaaaccgcgtcggc
aagatcttcgtcgactacctgcgcaacgcgcgcggcgcgagtacggtggcggcgtattcg
gtgcgggcacgccccggcctgccggtgtcggtgccggtcagccgggaagagttgaaggat
gtgcgctcagcccaacagtggacaatcgccaatctgctgcagcgcttgcggggtttgaag
gctgacccgtgggccggctatgccaaccggcagaagatcagcaagaagatgtgggacagg
ctgggcgcgcaaccaccgcagtga
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