Psychroflexus torquis: P700755_001880
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Entry
P700755_001880 CDS
T02275
Name
(GenBank) 3'-to-5' exoribonuclease R VacB
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
ptq
Psychroflexus torquis
Pathway
ptq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P700755_001880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptq03019
]
P700755_001880
Messenger RNA biogenesis [BR:
ptq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
P700755_001880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
RNase_II_C_S1
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
AFU68705
UniProt:
K4IT95
LinkDB
All DBs
Position
complement(2009720..2011945)
Genome browser
AA seq
741 aa
AA seq
DB search
MSKKKKKKQPFQSTPERDGGLSKKILDLFKKQPEKGFDFKYILEKLKIDDTKTRNSVIRL
LGQLTAKGQLKQIEDKQFQFAAVDDFHTGTIDMTSRGDAYVVIEDMEQDVYITNKNLNHA
LDGDEVKIYVFKKREKSKSEGEVISILTRYKTDFVGVLHKQEKFGFVVVGNSKMYTDIFV
PNDKMHGAEDGLLVKVRIVQWKDKDDSPKGEITEVLGVPGEHNTEMHAILAGYGLPEQFP
PEVEEFANGIDTKIHSSEIKKRRDLRDTLTFTIDPADAKDFDDALSFKKMDNGNYEIGIH
IADVAHYVQPGTILDDEAYNRATSIYLVDRVVPMLPEILSNGACSLRPNEEKYTFSALFE
LTPRGDVKSEWFGRTVTYSDARFAYEEAQFVIDSKDKHIPSDISLSKKAYDIQPELVDAI
TTMNDLSKIMRKERMNQGAISFDKVEVKFHLDEDNNPKGVYVKTSQDANKLIEEFMLLAN
RKVSEFIGKRKPPKTFVFRCHDEPQPDRLEALNTVVSKFGYSLDFKNKKNIANTLNGLLE
DVKGKKEQNLVDTLTIRTMSKAYYSTQNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQR
YIDKEQSASETEYEEKCKHSSEMEKLATNAERDSIKYMQVKYIQDQEETEYKGVISGVTD
FGIFIEISENKCEGMVRLKDISDDHYDFNEEHYAIIGRRTKKMYQLGEEVYVRVKKADLV
KRTIDFELLGSVEEVDIENEL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaagaaaaaaaaaaaacagcctttccagtcaacaccggagagggatggaggc
ttatcaaagaagatattagacctctttaagaagcaaccagaaaaaggatttgactttaaa
tatattctagaaaagttaaaaattgacgataccaaaactagaaattctgttattcgtcta
ctaggtcaacttactgcaaaaggtcaattaaaacagattgaagataaacaatttcagttt
gcagctgtagatgatttccataccggaactatcgatatgacgtctcgtggagatgcgtat
gtcgttatagaagatatggaacaagacgtctatattacaaacaagaatttgaatcacgct
ttggatggagatgaagttaaaatctacgttttcaaaaaaagagaaaaatcaaagtctgaa
ggtgaagttatttctatacttacgcgttataaaactgattttgtaggagttttacataaa
caagaaaaatttggttttgttgttgttggtaattcaaaaatgtatacagatatttttgta
cccaacgacaaaatgcacggtgccgaagatggtctccttgtaaaagtaagaatagtacaa
tggaaggataaagatgattcaccaaaaggtgagatcacagaagtgcttggggttcctgga
gagcacaatacagaaatgcatgcgattttagcaggctatggtttaccagaacaatttcca
cccgaagtagaagaatttgctaatggtatagataccaaaatccattcttcagaaataaag
aaaagaagagaccttcgagacaccctcactttcactattgatcctgcagatgccaaagat
tttgatgatgccttaagcttcaaaaaaatggacaatggtaactatgaaataggaattcac
attgccgatgttgcacattacgtccagccaggaactattttggatgatgaagcctacaac
agagcaacttctatttatttggtagatcgtgtggtacctatgctcccagaaatattatct
aatggagcttgttctcttagacccaatgaagaaaaatataccttttcagctttatttgaa
ttaacgccaagaggagatgtgaaaagtgaatggtttggaagaacagtaacctattctgat
gccagatttgcttacgaagaagctcaatttgttatcgattctaaagataaacacattcca
tcagatatttcgttgtctaagaaagcatacgatatccagccagaattagttgacgctata
acgacgatgaatgacctatctaaaatcatgcgtaaagagcgtatgaaccaaggtgctatt
tcttttgataaggtggaagttaaattccatttggacgaagacaataatcctaaaggagta
tatgtgaaaacaagtcaagatgctaataagttgatagaagaatttatgcttttggccaat
agaaaagtatctgaattcatagggaaacgcaaaccaccaaaaacttttgtgttccgttgc
cacgatgaacctcaaccagacaggttggaagccttaaatacagtagtttccaaatttgga
tattctcttgattttaaaaataaaaaaaatattgccaacacattaaatggtttattagaa
gatgtaaaaggcaaaaaagaacaaaatcttgtagatacacttaccataagaacgatgagt
aaagcctactactctactcaaaatattgggcattacggtttagctttcgactattattct
cattttacatcgcccataagacgttatccagacgtcatggctcaccgacttttacaacgc
tatatagataaggaacaaagtgctagtgaaacggagtatgaagagaagtgtaagcactct
agtgagatggaaaaactagcgactaatgcagagcgagattctataaagtacatgcaggtt
aagtatatccaagaccaagaagaaacagaatataaaggtgttatttctggtgtgacagat
tttggaatctttattgaaatttcagagaacaaatgcgaagggatggttcgactaaaagat
atttctgatgatcattacgattttaacgaagaacactatgccatcataggacgtcgtaca
aagaagatgtatcaacttggagaagaagtctatgttcgcgttaaaaaggcagacttagtg
aaaagaactatagattttgaactgctaggttctgttgaagaagtggacatagaaaacgaa
ttatag
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