Pseudomonas tremae: I9H09_10485
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Entry
I9H09_10485 CDS
T08237
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I9H09_10485 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptre03400
]
I9H09_10485 (ligD)
Enzymes [BR:
ptre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I9H09_10485 (ligD)
DNA repair and recombination proteins [BR:
ptre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I9H09_10485 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UQB38736
LinkDB
All DBs
Position
2292679..2295246
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AA seq
855 aa
AA seq
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MAKPASEYTRKRNFDVTSEPAESQRKGKTKSGALSFVIQKHDARNLHYDFRLELDGTLKS
WAVPKGPSLDPKQKRLAVHVEDHPLDYAGFEGSIPKGQYGGGDVIVWDRGIWQPHGDPQK
TYSEGKLKFTLVGEKLTGEWALVRTRLKGSGSKEQWLLIKEKDAIARPADEYDITQEQPQ
SVISGAHVGAARSTPDPAKGKAKAAAPKAATKKKPVKSKTVFPDALSPQLATLVDAPPAG
EWLYEIKFDGYRMLTRIQKGEVHLFTRNGNDWTERLPELVKALGALKLQDSWFDGEAVVL
DEEGLPDFQGLQNAFDEGHSKKILYYLFDMPFLSGEDLRELPLEQRRDALKQVLDSQRSR
LLRYSDDFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGY
TAPQGSRSAFGALLLAVNDDKQGMVYAGRVGTGFTEQTLKQLQKKLQPLQREGSPLGSKL
SSAQARGVQWVEPQQVCEVEFAQWTREGILRQAAFIGLRSDKPASDVVREEAQPAKVADH
TKAASTAPRIGKKAAKGRVDVAGTGISHPDRVIDSKTGTKKVELAQFYQSIAEWILPHLN
KRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRTLDPGHAALMEIDSPEALVGAVQM
GTIELHTWAATHNRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEELGLEAFLKTSG
GKGMHIIVPLARQADWDTVKAFSKAIAEFVSRQLPERFTATMGPKNRVGKIFIDYLRNSR
GGSTVTAYSVRARPGLPVSVPIALDELAGLTSSAQWDINNLEARLNQLKDDPWAGYSNRR
KITQKMWKQLGAKLP
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccagccagtgagtacacgcgcaagcgcaattttgacgttacctctgaaccc
gccgagagccagcgcaaaggcaagaccaagtccggcgcgctgagtttcgtgattcaaaaa
catgacgcgcgcaacctgcactatgactttcgactggagctggatggcacgctcaaaagc
tgggcggtgcctaaaggtccgagtctggatccgaagcaaaagcgtctggctgtgcatgtc
gaagatcacccgctggattacgcaggtttcgagggcagcattccaaaaggtcaatatggc
ggaggtgacgtcatcgtctgggacaggggcatctggcagccccatggcgatccgcaaaag
acctattcggaaggcaaactcaaattcacgctggtcggtgaaaagctcactggcgaatgg
gccttggtgcgcactcgcctcaagggcagcggcagcaaggagcaatggctactgatcaag
gaaaaggacgcgatcgcccgccctgctgacgagtacgacattacacaggagcaaccgcaa
agcgtgatcagcggcgcgcatgtcggggcagcccgttcaacgcctgaccctgcgaaaggt
aaagccaaggctgctgcaccgaaggccgcaacgaagaagaaaccagtcaaatcgaaaacg
gttttcccggacgcgctttctccccagcttgcgacattggtggacgccccgcctgcaggt
gaatggctgtacgagatcaagttcgacggctaccgcatgttgacgcgaatccagaagggt
gaagtgcatttgttcacccgtaacggcaacgactggaccgagcgtctgccagagctggtc
aaggcgctcggtgccttaaagttgcaggacagctggttcgatggtgaggctgtggttctg
gacgaggaagggctgcctgactttcaaggcctgcagaatgccttcgacgaagggcatagt
aaaaagatcctgtattaccttttcgacatgccgtttctgagtggcgaagacttgcgcgag
ttgccgctggagcagcgtcgtgatgcgctgaaacaagtgctcgatagccagcgcagccgc
ttgttgcgttactcggatgactttcaggccgggcatcaggacattgtggccagcgccgcc
gcgatggggcttgagggcgtgattggcaagcgtgccggcagtgcgtatgtcggcaagcgc
aatgccgactggatcaagctcaaatgccgcttgcgtcaggagttcgtgatcgttggctat
accgcgccacagggcagtcgctcggcgttcggcgctttgctgctggcagtcaacgacgat
aaacagggtatggtatacgccgggcgtgtaggcaccggttttactgagcaaaccctgaag
cagttgcagaaaaagctgcaaccgctgcagcgcgaaggttcgccactgggcagcaagctg
agctcggcgcaggcgcgcggggtgcaatgggtggagccgcagcaggtctgtgaagttgaa
ttcgctcagtggacgcgtgagggtatattgcgtcaggccgcttttatcggtttgcgcagt
gacaagccagccagcgacgtggtgcgcgaagaggcgcagccggcgaaggtcgccgatcac
accaaggctgcatccactgcgccacgcatcggaaaaaaagctgccaagggcagggtggac
gtggcgggcacaggtatcagccatccggatcgtgttatcgacagcaagaccggcacgaag
aaggttgagcttgcgcagttttaccagtccattgccgagtggattctgccgcacctgaac
aagcgtccggtggccctgttgcgttgtccggaaggcatcgacggcgagcagttttttcaa
aaacacgccgaacacctggccatcccgcacatccggcaactggatcgcaccctcgacccc
ggccacgctgccctgatggaaatcgattcgcccgaggcgctggtcggtgcagtgcaaatg
ggcaccatcgagctgcacacgtgggccgcgacacacaacaggatcgagacccccgatcat
ttcgtgctggaccttgaccctgaccctgcgttgccttggcgcagcatgatcgaagccacg
cagatggttctggcggtgctggaagagctcgggctcgaggccttcctcaagaccagcggt
ggcaaaggcatgcacatcatcgtgccattggcacgccaggctgactgggacactgtcaaa
gcgttctcaaaagctatcgccgagtttgtcagccgccagttgcccgagcgctttactgcc
acgatggggccgaagaaccgggttgggaaaatcttcatcgactacctgcgcaacagtcga
ggcggcagcacggtcaccgcctattcggtacgcgcccggccaggcttgccggtttcggtg
ccgattgcgctggatgagctggccgggctgacgtcgtctgcgcagtgggacatcaacaat
cttgaagcgcgtctgaatcagctcaaggacgacccgtgggcgggttacagcaaccgccgc
aagatcacccagaagatgtggaaacaactgggtgccaagctgccttga
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