Paenibacillus tritici: KDC22_05190
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Entry
KDC22_05190 CDS
T07560
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptri
Paenibacillus tritici
Pathway
ptri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KDC22_05190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptri03400
]
KDC22_05190
Enzymes [BR:
ptri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KDC22_05190
DNA repair and recombination proteins [BR:
ptri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KDC22_05190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QUL58018
LinkDB
All DBs
Position
complement(1235568..1236515)
Genome browser
AA seq
315 aa
AA seq
DB search
MKLQPLTPLEPVLAYGIPSGSQWIAQIKWDGVRMLAYYDGTSAELINRRGNRRTLQYPEL
ARPEAYCRAGSVILDGEIIALSGGKPSFHEVMRRDSLKNEAAIAVAVPRVPVLYMVFDIL
YCNGSWLLDEPLSRRQELLKEHLLPHPHVQQVPSYHDPAQLFSAARKGSLEGIVCKDLNS
TYAPGGKDRRWQKLKIISDVTAVAGGVTFRDGQVNALLFGLYDDAGKLHYIGHAGAGRMT
VQDWRTLTAQIEGLITERMPFAELPERSKGAVWIKPELVFKLHFLEWNPSGTFRQPVIQA
QVGLPPLSCRMDQKS
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
ttgaagctgcagccgctcactccgttagaacctgtgctggcatacgggattccttccggg
agccagtggatcgcccagatcaagtgggacggagtacggatgctcgcctattatgacgga
accagcgctgagctgattaaccggaggggcaaccggcgcaccctgcagtatcccgagctc
gccaggcccgaggcctactgccgggccggctctgtcattctggatggcgagattatagcg
ctaagcggcggcaagccttccttccacgaggtcatgcggcgcgacagcctgaagaatgag
gccgcgattgcggtagcagtgccccgggttccggtgctgtatatggtgtttgatattctg
tactgcaacggctcatggctgctggacgagccgctgtcccggcggcaggagctgctgaag
gagcacctgctgccccatcctcatgtgcagcaggtgccgagctatcatgatcctgcccag
ctgttctccgcagcccgtaagggcagtctggagggaattgtctgcaaggacctgaacagc
acctatgcccccggcggcaaagacagacgctggcagaagctcaaaattatctccgatgtc
accgctgtcgccggtggcgtcaccttccgcgacggccaggtcaacgcgctgctcttcgga
ctgtatgatgatgcaggcaagctgcattatatcggacatgccggggcgggcaggatgacc
gtccaggactggcggacgctgaccgcacagatagaggggctaattacggagcgtatgcct
tttgcagagcttcctgagcgcagcaaaggcgcggtctggattaagccggagctggtgttc
aagctgcatttcctggagtggaatccctccggcaccttccgccagccggtgattcaagcc
caggtcgggctgccgccattatcctgccggatggatcagaagagttag
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