Pseudomonas trivialis: AA957_16100
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Entry
AA957_16100 CDS
T04006
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ptv
Pseudomonas trivialis
Pathway
ptv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ptv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AA957_16100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptv03400
]
AA957_16100
Enzymes [BR:
ptv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AA957_16100
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AA957_16100
DNA repair and recombination proteins [BR:
ptv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AA957_16100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Motif
Other DBs
NCBI-ProteinID:
AKS07576
UniProt:
A0A0H5A9C2
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All DBs
Position
3592470..3593282
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVVVRERRLRWPIPEDLDVRLSGQRIVLVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGMPAAKHEHVDIELESGLALRYTDPRRFGAMLWSQD
PHNHELLIRLGPEPLTDLFDGDRLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGGISRARYLKLAIEIKRILAAAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGEACKVCGTELRNVVLGQRASVFCPKCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttaccagaagtcgaaaccacccggcgcggcattgcaccgcacctggaaggc
cagcgggtcagccgcgtggtggtgcgtgagcggcgcctgcgctggccgatcccggaagac
ctcgatgtgcgcctgtccgggcagcgcatcgtgctggtggagcggcgggccaagtacctg
ttgatcaatgccgaagtgggcacgttgatcagtcacttgggcatgtcgggcaacctgcgg
ctggtggaagtcggtatgccggcggccaagcatgagcatgtggatatcgaactcgaatcc
ggcctggccctgcgttacaccgaccctcggcgttttggcgccatgctctggagccaggac
ccgcacaaccatgagctgttgattcgcctggggccggagccgctgacggacctgtttgat
ggtgatcgcttgtttcaactgtcccgtgggcggtcgatggcggtgaagccgttcatcatg
gacaacgcggtggtggtgggcgtgggcaatatctacgcgacggaagcgctgtttgcggcg
gggatcgatccgcgtcgcgaggcgggcggcatttcgcgagcgcgttatttgaagctggcg
attgagatcaagcgcatcctggccgccgctatcgagcgcggtggtacgacgctgcgggac
tttatcggcggtgatgggcagccggggtatttccagcaggagctgttcgtttatggccgg
ggcggcgaggcgtgcaaggtctgcgggactgagttgcgcaatgtggtgctggggcagcgg
gcgagtgtgttttgccctaagtgtcagcgctga
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