Pseudomonas tohonis: TUM18999_18050
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Entry
TUM18999_18050 CDS
T07887
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ptw
Pseudomonas tohonis
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptw03032
]
TUM18999_18050 (topA)
03400 DNA repair and recombination proteins [BR:
ptw03400
]
TUM18999_18050 (topA)
Enzymes [BR:
ptw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TUM18999_18050 (topA)
DNA replication proteins [BR:
ptw03032
]
Prokaryotic type
DNA Topoisomerases
TUM18999_18050 (topA)
DNA repair and recombination proteins [BR:
ptw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TUM18999_18050 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BCG23614
UniProt:
A0A6J4E3S0
LinkDB
All DBs
Position
1970571..1973180
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPVKRGKAAASEA
PALSPKEKAKRQLFTRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDINRVNAQQARRFLDRV
VGYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLGTAKGANV
RFEVAKENGAAFKPLNEAQAMAALEQLKSSSYSVQKREDKPTSSRPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAITMVRGFIEGEFGEKYLPAKPNF
YSSKEGAQEAHEAIRPSDVNLKPTQLSGMERDAERLYDLIWRQFVACQMPPAEYLSTSVS
VAAGNFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPDMKEGEALKLIKLDPSQHFTKPP
ARFSEASLVKELEKRGIGRPSTYAAIISTIQERGYVTVHNRRFYSEKMGDIVTERLNESF
SNLMDYGFTAGMEENLDDVAQGERDWKNLLDEFYGDFKKKLEVAEVADSGMRVNQPTPTD
IACRECGRPMMIRTASTGVFLGCSGYSLPPKERCKATINLVPGDEIAADDEGESESRVLR
GKHRCPICSTAMDAYLLDETRKLHICGNNPDCAGYEIEQGQYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPSCKNTRKLLKNGEAAPPKIDPIKMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLELIPHKDELDPKYHFLLSAPAKDPDGRPAVIRFSRKTKE
QYVQSEVDGKPTGWRAFFDGGKWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagcatcggccatatccgtgacctgcctaccagc
ggttcggccagtgccagcaaggaaccggtgaagcgcggcaaggcggccgcgtccgaggct
ccggcgctatcgcccaaggaaaaggccaagcgccaattgttcacccgcatgggcgtcgac
cccgagcacggctggaaggcgaagtacgagatccttcccggcaaggagaaggtgatcgag
gaactgcgccgactggccaaggatgccgacaccatctatctcgcaaccgacttggaccgc
gaaggggaggccatcgcctggcacctgcgggaatccatcggcggtgacgacagccgctac
aagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaggccttctcccagccc
ggcgagctggatatcaaccgcgtcaacgcccagcaggcgcgccgcttcctcgaccgcgtg
gtgggctacatggtctcgccgctgctgtggcagaagatcgcccgcggcctgtccgccggt
cgcgtgcagtcggtggcggtgaagctggtggtcgagcgtgagcgtgagatccgtgccttc
gtgcccgaggagtactgggaagtccacgccgatctgggcactgccaagggggccaacgta
cgcttcgaggtggccaaggagaacggtgcggccttcaagccgctgaacgaagcccaggcc
atggccgcgctggagcagctcaagtcctccagctacagcgtgcagaagcgcgaagacaag
ccgacctccagccgtccgtcagcgcctttcatcacctccacactgcaacaggcggcgagc
aatcgcctgggcttcggggtgaagaaaaccatgatgatggcccaacgtctctacgaggcg
ggctacatcacctatatgcgtaccgactcgaccaacctctctgccgacgccatcaccatg
gtgcgtggcttcatcgagggcgagttcggtgagaagtacctgcccgccaagccgaatttc
tattcgagcaaggaaggcgcccaggaggcccacgaggccatccgcccctcggacgtcaat
ctcaagccgacccagctgtcgggcatggagcgcgacgccgagcgcctgtacgacctgatc
tggcgccagttcgtggcctgccagatgccgccggccgagtacctgtccaccagcgtcagt
gtggctgccggcaacttcgagctgcgcgccaagggtcgcatcctcaagttcgacggctac
acccgcgtgttgccgcagcagagcaagccgggtgaagacgatgtgctgcccgacatgaag
gaaggcgaggcactcaagctgatcaagctcgatcccagtcagcacttcaccaagccgccg
gcacgtttctccgaggccagcctggtcaaagagctggaaaagcggggcattggccgccca
tccacctatgccgcgatcatttccaccattcaggagcggggctatgtgacggtgcataac
cgtcgcttctactccgagaagatgggtgacatcgtcaccgagcgtctgaacgagagcttc
tcgaaccttatggactatggcttcaccgccggcatggaagagaacctggacgacgtggcc
cagggagagcgcgactggaagaacctgcttgacgagttctacggcgacttcaagaagaag
ctggaagtggccgaagtcgctgacagcggcatgcgcgtcaaccagccgaccccgaccgac
atcgcctgccgtgagtgcggccggccgatgatgatccgtaccgcttccaccggcgtgttc
ctgggttgctcgggctacagcctcccgccgaaggagcgttgcaaggccaccatcaacctg
gttccgggtgacgagatcgccgcggacgacgaaggtgagtccgagtcccgcgtgctgcgt
ggcaagcatcgctgcccgatctgcagcaccgctatggatgcctacctgctggacgagacc
cgcaagctgcatatctgcggcaacaacccggattgcgcgggctacgagatcgagcagggc
cagtaccgcatcaagggctatgaaggcccgagcctcgagtgcgacaagtgcggcagcgag
atgcagctgaagaccggccgtttcggcaagttcttcgggtgcaccaaccccagctgcaag
aacacccgcaagctgctcaagaatggcgaggctgcgccgccgaagatcgacccgatcaag
atgcccgagctcaagtgcgagaaggtggatgacacctacgtgctgcgcgatggcgcttcg
ggtctgttcctggccgccagccagttcccgaagaaccgcgagactcgagcgccactggtg
ctggaactgattccgcacaaggacgagctcgatcccaagtaccacttcctgctcagtgcg
ccggccaaggatcctgacggtcgcccggccgtcattcgtttcagtcgcaagaccaaggag
cagtacgtgcagtccgaagtggacggcaagccgaccggctggcgtgccttcttcgacggc
ggcaagtggaaggtcgaagacaagcgttga
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