Pseudomonas tohonis: TUM18999_18160
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Entry
TUM18999_18160 CDS
T07887
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TUM18999_18160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptw03400
]
TUM18999_18160 (mfd)
Enzymes [BR:
ptw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TUM18999_18160 (mfd)
DNA repair and recombination proteins [BR:
ptw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TUM18999_18160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCG23625
UniProt:
A0A6J4E2N9
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All DBs
Position
complement(1981717..1985169)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPESVLRLPTLPAAAGKQQWGNLPGAALSLAIAEAASAARRFTLLLTADSQSAERLEQEL
SFFAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELTHGVLVVPITTALHRLA
PTRFLLGSSLVLDVGQKLDVEQMRSRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDV
PFRIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLDKKAVTDFRGRFRERFDVD
FRRCPIYQDLASGITPAGIEYYLPLFFEDSATLFDYLPQDTQVFSLPGIEQAAEQFWNDV
RNRYEERRVDPERPLVPPAELFLPVEDCFARLKGSPRVVVSQEDLDTGVGRERFPARPLP
DLAIQAKASEPLAALRRFLEEFPGRVLFSAESAGRREVLLELLARLKLRPQEVSGWTEFV
AGKERLAITIAPLDEGLLLDDPGLALVAESPLFGQRVMQRRRRDRRGDGGDNVIKNLAEL
REGAPVVHIDHGVGRYLGLITLEIEGQSAEFLALQYAEEAKLYVPVASLHLIARYTGSDD
ALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPMADYATFSAGF
PFEETPDQQTAIDAVLADMLAPKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVP
TTLLAQQHYNSFRDRFADWPVKVEVMSRFKTAKEVEGAAQQLADGKVDIVIGTHKLLQDD
ITFKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIA
TPPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNEVKSIEKCAADLAELVPEAR
IGIGHGQMHERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLEQPLGGGPEINLRLPALIPEDYL
PDVHARLILYKRIASAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGIKK
VDAGPQGGRIEFAADTCVDPLVLIKLIQGQPKRYKFEGATLFRFQVPMERPEERFNTLEA
LFERLTPQSA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgagtccgtcctgcgtctcccgaccctgcccgccgccgccggcaagcagcaatgg
ggcaacctccccggtgccgccctcagcctggcgatcgccgaagccgccagcgccgcccgg
cgcttcaccctgctgctgaccgccgacagccagagcgccgaacgcctggagcaggaactg
agcttcttcgccccggacctgccggtgctgcacttcccggactgggaaacgctgccctac
gacctgttctcgccgcaccaggacatcatctcccagcgcatcgccagcctctatcgcctg
ccggagctgacccacggcgtgctggtggtgcccatcaccacagccctgcaccgcctggcg
ccaacgcgcttcctgctgggctccagcctggtgctggacgtcggccagaagctcgacgtc
gagcagatgcgcagccgcctggaggcggccggctatcgctgcgtggacaccgtctacgaa
cacggcgagttcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcgacgtg
cccttccgcatcgacctgttcgatgacgagatcgagaccctgcgcaccttcgaccccgag
acccagcgctcggtggacaaggtggaatcgatccgcctgctgccggcccgcgagttcccg
ctggacaagaaggccgtgaccgacttccgcggtcgcttccgcgagcgcttcgacgtggat
ttccgccgctgcccgatctaccaggacctggccagcggcatcacccccgccggcatcgag
tactacctgccgctgttcttcgaggacagcgccaccctcttcgactacctgccccaggac
acccaggtgttctccctgcccggcatcgagcaggccgccgagcagttctggaacgacgtg
cgcaaccgctatgaagagcgccgcgtcgaccccgagcgaccgctggtgccgcccgccgag
ctgttcctgccggtggaggactgcttcgcccggctcaagggctcgccacgggtcgtggtc
agccaggaggacctggacaccggcgtcggtcgcgagcgcttcccggcccgcccgttgccg
gacctggcgatccaggccaaggccagcgaacccctggccgccctgcgccgcttcctggaa
gagttccccggccgcgtgctgttcagcgccgaatcggccggccgccgcgaagtgctgctg
gagttgctcgcccgcctcaaactgcgcccgcaggaagtcagcggctggacggagttcgtc
gccggcaaggagcgcctggccatcaccatcgcgcccctggacgaaggcctgctgctggat
gacccgggcctggcgctggtcgccgagagcccgctgttcggccagcgcgtgatgcagcgc
cgccgccgcgaccgccggggcgacggtggcgacaacgtcatcaagaacctcgccgagctg
cgcgaaggcgcgccggtggtgcacatcgaccacggcgtcggccgctacctgggcctgatc
accctggagatcgagggccaatccgccgaattcctcgccctgcaatacgccgaggaagcc
aagctctacgtacccgtggccagcctgcacctgatcgcccgctacaccggcagcgacgac
gccctcgcgccgctgcaccgcctgggctccgaggcctggcagaaggccaagcgcaaggcc
gccgaacaggtacgcgacgtcgccgccgaactgctggacatctatgcccgtcgcgccgcc
cgcgaaggctatgccttcaaggacccgatggccgactacgccaccttctccgccggcttc
cccttcgaggagacgccggaccagcagaccgccatcgacgccgtactggccgacatgctg
gcgcccaagccgatggaccgcctggtctgcggcgacgtaggcttcggcaagaccgaagtg
gccatgcgcgccgccttcgtcgccgtgcacagcggcaagcaggtggcggtgctggtgccc
accaccctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccg
gtgaaagtcgaggtgatgagccgcttcaagaccgccaaggaagtggaaggcgctgcgcaa
cagctggccgacggcaaggtggacatcgtcatcggcacccacaagctgctgcaggacgac
atcaccttcaagaacctgggcctggtgatcatcgacgaggaacaccgcttcggcgtgcgc
cagaaggagcagctcaaggccctgcgcagcgaggtggacatcctcaccctcaccgccacg
ccgatcccgcgcaccctgaacatggccgtcgccggcatgcgcgacctgtcgatcatcgcc
actccacccgcgcgccgcctgtcggtgcgtaccttcgtcatggaacagcagaacaccgtg
atcaaggaggcgctgctgcgcgagctgctgcgcggcggccaggtgtactacctgcacaac
gaagtgaagagcatcgagaagtgcgccgccgaccttgcggagctggtgcccgaggcgcgc
atcggcatcggccacgggcagatgcacgagcgcgaactcgagcaggtgatgagcgacttc
tatcacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
cccagcgccaacaccatcatcatcgaacgcgccgacaagttcggcctggcccagctgcac
cagctgcgcggccgcgtcgggcgcagccaccaccaggcctacgcctacctgctcaccccg
ccacgcaagcagatgaccccggacgccgagaagcgcctggaggccatcgccaacgcccag
gacctgggggccggcttcgtcctggccacccacgacctggagatacggggtgccggcgag
ctgctcggcgacgggcagagcgggcagatccaggcggtgggcttcaccctctacatggaa
atgctcgagcgcgcggtcaaggccatccagaagggcgagcagcccaacctggagcaaccg
ctgggcggcgggccggaaatcaacctgcgtctgccggcgctgattcccgaggactacctg
cccgacgtgcacgcgcgcctgatcctctacaagcgcatcgcctcggccgccgacgaggac
ggcctgaaggagctgcaggtggagatgatcgaccgcttcggcctgctgccggaaccgacc
aagaacctggtacgcctgaccctgctcaaactgcaggcggagaagctcggcatcaagaaa
gtcgacgctggcccgcagggcggtcggatagaattcgccgccgacacctgcgtcgacccg
ctggtgctgatcaagctgatccagggccagcccaagcgctacaagttcgaaggcgccacg
ctgttccgcttccaggtgccgatggagcgcccggaagaacgcttcaacacactcgaggcg
ctgttcgagcgcctgactccgcaatccgcttaa
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