Pseudomonas toyotomiensis: JWV26_12810
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Entry
JWV26_12810 CDS
T07285
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pty
Pseudomonas toyotomiensis
Pathway
pty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWV26_12810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pty03019
]
JWV26_12810
Enzymes [BR:
pty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWV26_12810
Messenger RNA biogenesis [BR:
pty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWV26_12810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QSL90660
LinkDB
All DBs
Position
complement(2777667..2779559)
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AA seq
630 aa
AA seq
DB search
MSFASLGLSEALVRAVESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDREQRHGPKQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLASSHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLLGFDASTVEAERPETREPRQPRGQKQAKAQNAQGGDKPKGERN
NGGRRDKGKDSGKDQKAKPQQQGQGQNRRGQQSRSQSRGAAPAIPPLPPDRDPEEFLDDE
IDNFGNRADYVPVQNKPQGRGRRSGGGSAGNGAAQGQGQRANSNNRQPRSNAGGNPGNPG
NPGKNRRQGGQGRNGGGRGRPADGRITSLDRDELPRAEAAVRNPREKQPIIVHKGSRLDR
FPSAEQLDELSNSTRPRSEKPALLTRNREE
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctctagtccgtgcggtcgaatccgccggc
tacacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctcatggtggcggcccagacgggtacaggtaagacgggcggtttcgccctgccgatcctc
gaacgcctgtttccgggcggtcatccggatcgcgaacaacgtcacggcccgaaacaaccg
cgcgtgctggtgctgacacccacccgcgaactggccgctcaggtgcatgagagcttcaag
gtctatgcccgcgatttgaaattcgtcagcgcctgcattttcggcggcgttggcatgaac
ccgcaggtccaggccctggccaagggtgtcgacgttctcgtggcctgccccggccgcctg
ctcgacctggccaatcagaaggccatcgatctgtcccatgtcgaaatcctcgtgctcgat
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctggccaaa
ctgccggcacagcgccagaacctgctgttctcggccaccttctccaaggacatcaccgac
ctggccggcaagctgctgcacaaccccgagcgcatcgaggtcacgccgccaaacaccacg
gtcgaacgcatcgaacagcgcgtgttccgcctggcctccagccacaaacgcgccctgctc
gcccacctgatcacccagggcgcctgggaacaggtattggtgttcacccgcaccaagcac
ggtgccaaccgcctggccgagtacctcgacaagcatggtctgccggctgccgcgatccat
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccaaccaggta
cgcatcctggtagccaccgatatcgccgcacgcggcctggatatcgaccagctgccgcat
gtggtcaacttcgagctgcccaacgtcgaggaagactacgttcaccgcatcggccgtact
ggccgtgccggccgtagcggcgaggccatctcgctggtcgcgccggacgaagagaagctg
ctgaaaagcatcgagcggatgaccaagcagaagatccccgacggcgatctgctgggcttc
gacgccagcaccgtcgaggccgagcgcccggaaacccgcgaaccgcgccagccgcgcggg
cagaagcaagccaaggcgcagaacgcccagggcggcgacaaacccaagggtgagcgcaac
aacggtgggcgcagagacaagggcaaggacagcggcaaggaccagaaagccaagccgcaa
caacagggtcagggccagaaccgccgtggtcagcagtcgcgcagccagagtcgtggcgca
gcgccggccattccacccttgcctccagatcgcgacccggaagagttcctcgacgacgaa
atcgataatttcggcaaccgtgccgattacgtaccagtgcagaacaagccacaaggtcgc
ggccgtcgctcaggcggtgggtcggctggcaatggcgctgctcagggccaaggccagaga
gccaacagcaacaacaggcagccccgcagcaacgctggcggcaacccaggcaacccaggc
aaccccggcaagaatcgtcgccaaggcggccaggggcgtaacggcggtggccgtggccga
ccggcggacggtcgcatcacctcgctggatcgcgacgagctgccacgcgccgaagcggcc
gtgcgcaacccgcgcgaaaagcagccgatcatcgtgcacaagggctcgcgcctggatcgt
ttccccagcgccgagcagctcgacgaactgagcaacagcactcgtccacgcagcgaaaag
ccggcgctactgacgcgtaaccgcgaagagtaa
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