Pseudomonas tensinigenes: HU718_020750
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Entry
HU718_020750 CDS
T07620
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptz
Pseudomonas tensinigenes
Pathway
ptz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU718_020750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptz03400
]
HU718_020750 (mfd)
Enzymes [BR:
ptz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU718_020750 (mfd)
DNA repair and recombination proteins [BR:
ptz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU718_020750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXI04458
LinkDB
All DBs
Position
4705708..4709157
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLMLDDPALALVAESPLFGQRVMQRRRREKRADGNNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFEAQTPVDPMTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLLPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgctactccctgccgaggcaggtaaacagcattggggcaat
ttgcccggtgctgccctcagtctggcgattgccgaggctgccagcgctgccaagcgcttc
accctgctactgaccgccgacagccagagcgctgaacgactggaacaggagctgagtttc
ttcgccccggatttgcccgtgctgcatttccccgactgggaaaccctgccgtacgacctg
ttttcgccgcatcaggacatcatttcccagcgcatcgccagcctgtataggctgccggaa
ctggaacatggcgtgctggtggtgccgatcaccacggccctgcatcgtctggcgccgacc
aaattcctgctcggcagcagcctggtgctggatgtcggtcagaagctcgacgttgaacag
atgcgctcgcgtctcgaagccagcggctatcgctacgtcgacacggtgtatgagcacggc
gagttcaccgtgcgcggcgcgttgatcgacctgttcccgatgggcagcaagttgccctat
cgcatcgacctgttcgatgacgaaatcgaaaccctgcgtactttcgatccggaaaaccag
cgctccatcgacaaggtcgactcggtcaagctgctgccggcccgtgagtttccgctgcaa
aaagacgcggtcacccgcttcaaggcgcgcttccgtgagcgctttgacgtcgacttccgt
cgctgcccgatctttcaggatctgagcagcgggattactccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctcgaccctgttcgattacctgccgcaagacacgcaa
gtgttctcgctgccgggcatcgagcaagcggcggagaatttctggaacgacgtgcgtaat
cgttatgaagagcgccgcgtcgatccatcgcgtcctttattgccacccgccgaattgttc
ctgccggtggaagattgtttcgcccgcctgaagagttggccgcgtgtggttgccagtcag
caagacgtcgaaaccggcgtcggccgcgagcgattccccgcgcaggcgctgccgaacctg
gcgatcgaagccaaagccacgcaaccgctggcggcgctgtcggcatttctcgatgaattc
cccggccgcgtgctgttcaccgctgaatccgccggccgtcgcgaagtcctgctggagttg
cttgagcgtctgaagctgcgaccgaaaaccgtcgacagctggccggacttcgtcgcgagc
aaggatcgcctggcgatcaccattgccccgctcgatgaaggtctgatgctggatgacccg
gcgctggcactggtcgcggaaagcccgctgttcggccaacgcgtgatgcaacgtcgccgc
cgcgagaaacgtgccgacggcaacaacgatgcagtaatcaagaacctcaccgagctgcgt
gaaggcgccccggtggtgcacatcgatcacggtgtcggccgctatctgggcctgacgatt
ctggaaatcgacaatcaggcggccgaattcctcaccctcgaatacgccgagaacgccaaa
ctctatgtgccggtggccaacctgcatttgattgcgcgctacaccggcagcgacgatgcg
ctggccccgctgcaccgcctcggctccgaggtttggcagaaagccaaacgcaaagccgcc
gaacaggtgcgcgatgtcgccgccgaactgctcgacatctatgcccgccgcgccgctcgc
gaaggctacgcattcgccgacccgaaggccgattacgcgacgttcagcgccggtttcccg
ttcgaagaaaccccggatcagcaatcgaccatcgaagccgtgcgcgaagacatgctcgcg
ccgaaaccgatggatcgactggtctgcggtgacgtcggtttcggcaagaccgaagtggcc
atgcgcgcggcgttcatcgctgtgcatggcggtcgtcaagtggcgattctggtaccgacc
accctgctcgcccagcagcactacaacagcttccgcgatcgcttcgccgactggccggtg
accgtggaggtaatgagccgcttcaaatcggccaaggaagtgaatgcggcgattgccgat
ctggcggaaggcaagatcgacatcgtcatcggcacgcacaagctgctgtccgacgacgtc
aaaatcaaaaacctcgggttggtgatcatcgacgaagagcaccgtttcggtgtccgtcag
aaagaacagctcaaggccctgcgcagcgaagtcgacattcttacgctgaccgccacaccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgatctgtcgatcatcgccacg
ccgccggcgcgtcgcttgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctccgcgaactgctgcgtggcggtcaggtttactacctgcacaacgat
gtgaaaaccatcgagaaatgcgctgccgatctcgccgaactggtaccggaagcacgtatc
ggcatcggtcacggacagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctat
cacaagcgtttcaacgtgctgatcgcctcgaccatcatcgagaccggcattgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcaactgcaccag
ttgcgtggtcgcgttggccgtagccaccaccaggcttacgcgtacctgctgacgccgccg
cgccagcaaatcacctcggacgcggaaaagcgtctggaggcgatcgccaacacccaggac
ctcggcgccggtttcgtactggccaccaacgacctggaaatccgtggcgccggtgaactg
ctcggcgatggccagagcgggcagattcaagccgtcggtttcacgctgtatatggaaatg
cttgagcgcgctgtgaagtcgatccgcaagggcgagcaaccgaaccttgatcaaccgctg
ggcggtggcccggaggtcaatctgcgcgtaccggcgctgataccggaagactatctgccg
gatgtccacgcacgcctgattctgtacaagcgcatcgcgtcggcgaccgatgaggaaggc
ctgaaggatctgcaagtcgagatgatcgaccgtttcggcttgttgccggaaccgacgaag
aatctggtgcggatcacggcgttgaagttgcaggccgaacaattgggcatcaagaaagtc
gatggcgggccgcaaggtggacgtatcgagttcgaagcgcagacgccggtcgacccgatg
acgctgatcaagctgatccagagccagccaaaacgctacaaattcgaaggcgcgacgatg
ttcaagttccaggtgccgatggaacgcccggaagagcgctttaatactgtagaggcgctg
tttgagcgcctcctcccgaaatctgtttaa
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