Pantoea vagans C9-1: Pvag_3414
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Entry
Pvag_3414 CDS
T01326
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pva
Pantoea vagans C9-1
Pathway
pva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pvag_3414 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pva03019
]
Pvag_3414 (recQ)
03400 DNA repair and recombination proteins [BR:
pva03400
]
Pvag_3414 (recQ)
Enzymes [BR:
pva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pvag_3414 (recQ)
Messenger RNA biogenesis [BR:
pva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pvag_3414 (recQ)
DNA repair and recombination proteins [BR:
pva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pvag_3414 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADO11546
UniProt:
E1SKP6
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All DBs
Position
3620490..3622319
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AA seq
609 aa
AA seq
DB search
MATSAVLNQEALAQQVLQDTFGYQQFRPGQQTIINEALSGRDCLVVMPTGGGKSLCYQIP
ALVREGLTLVVSPLISLMKDQVDQLLANGVAAAYLNSTMTRDQQQTVMADCRTGRVKLLY
IAPERLMMDNFLESLAHWQPAMLAVDEAHCISQWGHDFRPEYGALGKMRQRFPELPVMAL
TATADETTRNDIVNLLHMQDPLIQISSFDRPNIRYTLVEKFKPTDQLLRYVQDQRGKCGI
IYCNSRAKVEDTAARLQSRGFSVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMAWLRKCLEEKVPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCDNCDICLDPPKRYDGLVEAQKAL
SGIYRVGQRFGMGYIVEVLRGSNNQRIREQGHDKLPVYGLGKDQSHEHWVSVLRQLIHLG
LVTQNIAMHSALQLTEAARPVLRGEVPLMLAVPRLITAKTKSSGPAKFHGGNYDRKLFAK
LRKLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGHRKLERFGKPFLVM
IKEHLDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacctcggcagttcttaatcaggaagcgctggcgcagcaggtattgcaggatact
ttcggctaccagcagtttcgtcccggtcagcagacgatcattaatgaggcgttgagcgga
cgcgactgtctggtggtgatgcccaccggcggcggtaaatcgctctgttatcagatcccg
gcgctggtgcgtgaagggctgacactggtggtgtcgccgctgatctcactgatgaaagat
caggtcgatcagctgctggcgaacggcgtggcggcagcctatctcaattccaccatgacg
cgcgatcagcagcagacggtgatggctgactgccgtaccggccgggttaagctgctctac
atcgccccagaacgcctgatgatggataatttcctggaaagtctggcgcactggcaaccg
gcgatgctggcggtagatgaggcgcactgtatttcacagtggggccacgatttccgtccg
gaatatggtgcactcgggaagatgcgtcagcgcttcccggaattaccggtcatggcattg
acggcgactgcggacgaaaccacccgcaacgacatcgttaacctgctgcacatgcaggat
ccgctgattcagatcagcagctttgaccgccccaatattcgctacacgctggtggaaaaa
ttcaaacccaccgatcagctgctgcgctacgttcaggatcagcgcggcaaatgcggcatt
atctactgcaatagccgggcgaaggtggaagacaccgccgcgcggctgcaaagccggggt
ttcagcgtcggggcgtatcatgccggcatcgacagcgaacagcgtgcccgcgtgcaggaa
gcgttccagcgtgacgatctgcaaatcgtagtggcgaccgtggcttttggcatgggtatc
aacaagcccaacgtccgttttgtggtccacttcgatattccgcgcaacatcgagtcctac
tatcaggaaaccggacgagccggacgtgatggtctgcccgccgaagcgatgatgctctac
gatccggccgatatggcctggctgcgtaaatgcctggaagagaaagtgccggggcccttg
caggatattgaacgccacaagctcaacgccatgggcgcgtttgctgaagcacagacctgc
cgccgcctggtgctgctgaattattttggcgagggtcgccagcagccgtgcgacaactgc
gatatctgccttgatccgccgaaacggtatgacggcctggttgaagcgcaaaaagcgctc
tccggcatctatcgcgtcggccagcggttcggcatgggctatatcgttgaggtcctgcgc
gggtccaacaaccagcgcatccgtgaacagggtcatgacaaactgccggtttatggactg
ggcaaagatcagagccacgaacactgggtcagcgtgttacgtcagttaatccatctgggg
ctggtgacgcagaacattgctatgcactcggcattacaactcaccgaagcagcgcggccg
gtgctgcgcggtgaagtgccactgatgctggcggtgccgcgtttaatcaccgcgaaaaca
aagagcagcggtccggcgaagtttcacggtggtaactacgatcgcaaactgttcgctaag
ctgcgtaagctgcgaaaagcgatcgccgacgaagagaatattccgccttacgtggtgttc
aatgacgccacgctgatagagatggcagaacagatgccggtcagcgcgtccgagatgctt
agcgtcaacggcgtggggcaccgcaaactggagcgctttggcaaacccttcctggtgatg
atcaaagagcatcttgatgatgaagagtaa
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