Penaeus vannamei (Pacific white shrimp): 113812937
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Entry
113812937 CDS
T06111
Name
(RefSeq) DNA polymerase delta catalytic subunit-like isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03030
DNA replication
pvm03410
Base excision repair
pvm03420
Nucleotide excision repair
pvm03430
Mismatch repair
pvm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113812937
03410 Base excision repair
113812937
03420 Nucleotide excision repair
113812937
03430 Mismatch repair
113812937
03440 Homologous recombination
113812937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvm03032
]
113812937
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113812937
Enzymes [BR:
pvm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
113812937
DNA replication proteins [BR:
pvm03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
113812937
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
113812937
MMR (mismatch excision repair)
DNA polymerase delta complex
113812937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
113812937
NCBI-ProteinID:
XP_027220666
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVQAKKGSTVKGPVKLLRMDQKRPHPNGGKAGPPKKIRGDEDDDMDFDDEFPDDYDMEQ
FDEQDFTEPQGAKVVDDGDTNSSWGRPPFPSVNPATENLVFQQIDIDHYIGPPCEGMPGQ
QAGRVPIMRMFGVNDNGNSICCHVHGFSPYLYVTCPPVFKESHLGAFKDALNRVMIADMK
SNKENITDAVLAVDLTKKESIYGFHGNKKVPFLKITLALPRLIAAAKRLLGEGKVFVSDI
GTPAYEAYESNIDFEIRFMVDTHVVGCSWIELPAGSWSIRKDKLDTRCQLEVDVAWNKFI
SHAPEGEWGRVAPFRILSFDIECAGRKVYEKNGKYYWVFPEPDKDPVIQIGNMVIRQGEA
EPFVQTIFTLKQCAPIVGSKVKSYNVEKEMLDEWAKFVRTVDPDIITGYNINNFDMPYLL
NRANHLKSETFSFLGRIKSIRSVIKESVLQSKQMGRRENKSINTEGRCQFDLLLVLVRDY
KLRSYTLNAVSYHFLQEQKEDVHHSIISELQNGNPQTRRRLAIYCLKDALLPLRLLDKLM
CIINYMEMARVTGVPLSYLLTRGQQIKVVSQLLRKAAEQDLVLPVHKSAGDDEYEGATVI
EPRRGYYNVPIATLDFSSLYPSIMMAHNLCYTTLLSSPAKANELGLESDEFIKTPSGNYF
VKSTKRKGLLPEILESLLAARKKAKNDLKNETDPLRKKVLDGRQLALKISANSVYGFTGA
QVGKLPCLEISQSVTAFGRMMIAFTKEQVEGKYTLENNYPSNAEVIYGDTDSVMVKFGVE
TVAEAMELGKEAAAYVTEKFLKPIKLEFEKVYFPYLLINKKRYAGLYFTRPEVHDKMDCK
GIETVRRDNSPIVANLINTCLQKILIDRNPMGAVDYAKQTISDLLCNRVDISNLVITKEL
TKTEKEYAAKQAHVELANKMKKRDPGTAPKLGDRVPFVIIAGAKGTPAYEKAEDPIYVLE
NSLPIDYEYYLTNQLSKPLLRIFEPILGEKAESQLLKGDHTRSRIITHSKVGAMAKFITK
KASCVGCKVPITSASEALCKHCKMREGEIYMQHISTLGALEEKFARLWTQCQRCQGSIHE
EVICTSRDCPIFYMRKKVQLELADQDKVIQRFGAPAW
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttcaggcaaaaaagggaagtactgtaaaaggacctgtgaagttgttgaggatg
gatcagaagcgaccccatccaaatgggggtaaagcaggaccacccaaaaagataagagga
gatgaagatgatgatatggactttgatgatgagttccctgatgactatgacatggagcag
tttgatgaacaagatttcacagagccacagggagcgaaagttgtcgatgatggggacaca
aacagctcttggggtcgccctccatttccctcagttaaccctgcgacagagaatctggtt
ttccaacagattgatattgatcattatattggaccaccttgtgaaggaatgccagggcaa
caggcaggtagagtgcccatcatgaggatgtttggtgtcaatgacaatgggaactccatc
tgctgtcatgtgcatggcttctctccctacctgtatgtcacttgtccacctgtcttcaag
gaatcacacctgggagcatttaaagatgccctcaaccgagtgatgatcgctgacatgaaa
tcgaacaaggaaaacatcacagatgccgtccttgccgtcgacctgaccaaaaaggaaagt
atctatggtttccatggcaacaagaaagtgccattcttgaagatcaccttagccttgccc
agactgatagctgcagcgaagaggctccttggggaggggaaggttttcgtgtcagacatt
ggaacgcctgcttatgaagcctatgagtctaatattgatttcgaaatcaggttcatggtt
gacacacatgtagtaggctgcagttggatagagctgccagcaggctcgtggtcgataagg
aaggacaagctggacactcgctgccaactggaggtggatgtggcctggaacaaatttata
tcccatgctcctgagggtgaatggggcagggtggcaccttttagaatcctctcatttgac
atagaatgtgcaggacgtaaagtctatgagaaaaatgggaagtattattgggtgttcccg
gagccggacaaggaccccgtgattcagataggcaacatggtgataaggcagggagaagct
gagccgtttgtacagacaatatttactctgaagcagtgtgctcccattgtgggctcgaaa
gtcaagtcctacaacgtagaaaaggaaatgttagatgaatgggcaaaatttgtaaggaca
gttgacccagacatcatcacaggttacaacatcaacaatttcgacatgccttatctgctc
aatcgggcaaatcacctgaaatctgagacattttccttcctcggcagaatcaaaagcatc
aggtctgtgatcaaagagtcagtgctacagagtaaacaaatgggaaggagggaaaacaag
tcaatcaacacagaaggaagatgtcaatttgatcttctccttgtcttggtacgagattac
aaactcaggtcctacacattgaatgctgtgtcgtaccatttcctgcaagaacagaaggaa
gatgtccaccattccatcatctcggagcttcagaatggcaatccacagacacgcagaagg
ttagccatatactgcctgaaagatgctctccttcccttgcgtctgctggataaacttatg
tgtatcatcaactacatggagatggctcgtgtgacaggagtccccctgtcctacctcctc
acccgtggccaacagattaaagtcgtatcacagctgctgcgaaaggcagcggaacaagac
ctcgtcctcccagtccacaagagtgcaggagacgatgagtatgaaggagcgaccgtcatt
gaaccccgcagaggctactacaacgtccccattgcgacacttgatttctcctctctgtat
ccatctattatgatggctcacaacctctgctacacaacactcttgtctagtccagctaag
gctaatgagttaggactcgaaagtgacgagttcatcaaaaccccgtcaggaaactacttt
gtaaaatcaaccaagaggaaagggttgctgcctgaaattctggagtctctcctggcagca
aggaagaaggcgaagaatgacctaaagaacgagaccgatcccttgagaaagaaggtgctg
gatggtcgtcagttggctttgaagatatctgccaattctgtgtatggtttcactggagct
caagttggcaaactgccatgcttggaaatatctcagagtgtaacagcatttggacgaatg
atgattgcgttcacaaaggaacaggttgaggggaagtacactttggagaacaattaccca
agtaatgcagaggtcatttacggcgacactgactctgtgatggtgaagtttggcgtagag
acagtggctgaggctatggagctagggaaggaggctgctgcttatgtcacagaaaagttc
ctgaagccaatcaaactcgagtttgagaaagtgtatttcccatatctgctgatcaacaaa
aagagatatgccggcttgtactttactcggccagaagtccacgacaagatggactgcaag
ggtattgagaccgtgcgacgtgacaattctcccatcgttgcaaacttgatcaacacttgc
ctccagaagatcttgattgacaggaatccaatgggagcagtagactatgccaagcaaacg
atttctgatctcctgtgtaatcgcgtggacatctccaacctcgtcattacaaaggaactg
acaaagacagagaaagaatatgcagccaaacaggctcatgtagagcttgccaacaagatg
aagaagagagatccaggcacggctccaaaactgggcgatcgagttccttttgtgatcatt
gcaggagcgaaaggaacacctgcttatgaaaaggctgaggaccccatttatgtgttagag
aacagcttgcccattgactacgaatactacctgaccaatcagctgagcaaaccccttttg
cgaatttttgagcccatcctaggagagaaggcagaatcacagctactaaagggagatcac
accagatcaagaatcataacacacagcaaagtaggagccatggcaaaattcatcaccaaa
aaggcctcttgcgttggctgcaaagtcccaattacttcagcatctgaagcattatgtaaa
cattgcaagatgcgagaaggcgagatttacatgcagcacatatcaactttaggagctttg
gaagaaaagtttgcacggttgtggacacagtgtcagcgatgtcagggatccatccatgaa
gaagttatctgtactagccgagactgtccgattttctacatgcgtaagaaagtacaactg
gagttggctgatcaagacaaagtgatacagagatttggagctcctgcgtggtga
DBGET
integrated database retrieval system
