Paenibacillus vortex: PVOR_31189
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Entry
PVOR_31189 CDS
T05385
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pvo
Paenibacillus vortex
Pathway
pvo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVOR_31189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvo03021
]
PVOR_31189
03400 DNA repair and recombination proteins [BR:
pvo03400
]
PVOR_31189
Enzymes [BR:
pvo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVOR_31189
Transcription machinery [BR:
pvo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVOR_31189
DNA repair and recombination proteins [BR:
pvo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVOR_31189
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
EFU38274
UniProt:
A0A2R9SLM5
LinkDB
All DBs
Position
complement(34592..38206)
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDVDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNNPEWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEKGTGMILGSVNEAVSAYQREAAGLHARVAIP
VKALGKTNFTEEQQNAILVTTIGRIIFNEIFPASFPYINEATRTNLLHGTPEKYFVYEKG
ADIQKVIQELPISGAVGKEYLGSIIARCFETYHTTETSVILDKIKQIGFTYSTRAGVTVA
VSDVIVPDEKNEILKESDEKVKVVTNQYRRGLITNEERYDRVIDIWSKTKDDITEVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFLS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDECSTDKGFTVSRIQDGKEVIEDL
YDRIEGRYAFETVRHPETKEIIVNRNELIDSDKAEEIVAAGVEKLQIRSILSCRARYGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIRETKDRREIEIQGEAETKVYAVTYGSRLRVSEGKHIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKFRI
VDAGDTNLLPGSFVDMHEYETANKDAILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSVKFAGQNDVNDESQELET
ASID
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaattttgagtacatgaaaatcggtcttgcttcaccggaaaaaatt
cgctcttggtctcgcggagaggtgaagaagccggaaacgattaactaccgtacattgaag
ccggagaaagaaggcctgttctgtgagcggatttttggcccgcagaaggactgggaatgt
cattgcggtaagtataagcgtgtccgttataaaggagtagtctgtgatcgctgtggcgtt
gaagttacgcgcgccaaagtccgtcgtgaacggatgggccatatcgagcttgcggctcct
gtatcgcacatttggtatttcaaagggattcctagccgcatgggtctggctttggatatg
tccccaagatctcttgaggagatcatttatttcgcatcttatgttgtaacagatccagga
gatacgccgctggagaagaaacaactgctgtccgagaaggaatatcgcagctatcgtgag
aagtatggctacgggttccaggcaggcatgggtgcggaagctgtcaagaagcttcttcaa
gacatcgacgttgataaagagttggagttcctgaaggaagaattgcgtacagcacaaggt
cagcgccgcaaccgggcgatcaaacgcctggaagttattgaggcgttccgtaactccggc
aacaatccggagtggatgatcatggatgtgctgccggtcattccaccggagcttcgtccg
atggttcaactggatggtggacgctttgcgacctccgacttgaacgatctgtaccgtcgc
gttattaaccggaacaaccgtctgaaaagactgctggatctcggcgcgccggatattatc
gtacagaacgagaaacgcatgctgcaggaagctgtcgatgctctgatcgataacggtcgt
cgcggccgtccagtaacaggtcctggtaaccgtccgcttaaatctctcagccacatgctg
aaaggtaaacaaggacgtttccgtcagaacttgctcggtaaacgggttgactactctggt
cgttccgttatcgttgtaggtccttacctgaaaatgtaccagtgcggtctgcctaagaaa
atggcacttgagctcttcaagccgttcgttatgaaggaattggtcaacaaaggccttgca
cataatatcaagagcgctaaacgcaaagtagaacgcgtaagtccagaagtatgggatgtg
ctcgaagaagtcattaaagagcatccggttcttctgaaccgtgcaccgacgcttcacaga
ctcggtattcaagcatttgaaccgatccttgttgaaggtcatgccatccgtcttcaccca
ctcgtatgtacagcttataacgctgactttgacggtgaccaaatggcggttcacgttcct
ttgtctgctgaagctcaagctgaagcacggctcttgatgctggcatcgggtaacattctg
aacccgaaagacggcaaaccggttgttacgccatctcaggatatggtactcggttccttc
tatctcacgatggataacaaggaagagaaaggtaccggtatgattctgggcagcgtgaac
gaagcggtatccgcatatcagcgtgaagcagcaggactgcatgcacgcgtagcgattccg
gttaaagcgcttggcaaaaccaactttaccgaagaacagcagaatgctattttggttacg
acgattggccggattatctttaacgagattttccctgccagcttcccatacattaatgaa
gcgactcgtacgaacctgctgcatggtacgcctgagaagtatttcgtatacgagaagggt
gcagatattcaaaaagtaattcaggaattgccgatcagcggagctgtaggcaaggaatat
ctgggttccatcattgcacgctgtttcgaaacgtaccatacaaccgaaacctctgtgatt
ttggataaaatcaagcagatcggtttcacctactctactcgtgcaggcgtaaccgttgcg
gtttctgacgttattgtacctgacgagaagaatgaaattctgaaagagtccgatgagaag
gttaaagtagtaacaaaccaatatcgtcgcggcttgattacgaatgaagaacgctatgac
cgtgttatcgacatatggtccaagaccaaggatgacattacggaagtactcatgaaatca
atggatcgctttaactccattatgctcatggtggactccaaggcacggggtaacaaatcg
cagatcacccagcttggtggtatgcggggtctgatggcgaacccgtccggtcgtatcatc
gaactcccaatcaaatcgaacttccgtgaaggtctgacggtactcgagtacttcctgtcc
actcacggtgcacgtaaaggtcttgccgatacagcgcttcgtaccgctgactccggttac
ttgactcgtcgacttgttgacgtggcccaggatgttatcgttcgcgaagatgagtgcagc
acggacaaaggcttcaccgttagccgtatccaggacggcaaggaagttattgaggatctc
tatgaccgtattgaaggacgttacgcatttgaaaccgttcgtcatccggaaaccaaagag
attatcgtaaatcgcaacgaattgattgattccgacaaagctgaagagatcgtggcagct
ggtgttgaaaaacttcaaattcgttccatcttgagctgccgtgcacgttatggcgtctgc
aaaaaatgttatggtcgtaacctggctactggtaagcatgttgagattggtgaagcggtt
ggtatcatcgcagctcaatccatcggtgagccgggaacacagcttacgatgcgtacattc
cacacaggcggtgttgccggagacgatatcacgcaaggtcttccgcgtatccaagagctc
tttgaagcccgtaatcctaaaggtcaagcgaccattagtgagatcgacggtgtggttaaa
gagatccgcgaaacgaaagaccgtcgtgaaattgaaattcaaggtgaagccgaaacgaaa
gtttacgcggttacctatggctcccgtctgcgcgtaagcgaaggcaagcacatcgaagcc
ggggatgaactgacggatggttccattgatccgaaggaaatgcttcgcatcaaaggtatc
cgtggtgtgcagaactacatccttcaggaagtacaacgcgtataccgtaaccagggtgta
gaaattaacgataaacacgttgaagtaatgatcagacagatgctgcgtaaattccgtatc
gttgatgcgggcgataccaatctgctgccaggctccttcgtggatatgcatgaatacgag
acagccaataaagacgctattctgtctggaaaagaaccagcagttgctaaaccggttctt
ctcgggattacgaaagcttcccttgaaacagattcgttcttgtcagcggcctccttccag
gagacgactcgcgtgttgactgatgctgccattaaaggtaaagtcgatcaactccttggc
ctgaaagagaatgttatcattggtaagctgatccctgcgggaacgggtatgaaccgttat
cgcagtgtgaagtttgcgggacagaacgacgtgaatgacgaaagtcaggagctcgaaacg
gcttctatagattaa
DBGET
integrated database retrieval system
