KEGG   Phaseolus vulgaris (common bean): PHAVU_011G085900gHelp
Entry
PHAVU_011G085900g CDS       T03093                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03030  DNA replication
pvu03410  Base excision repair
pvu03420  Nucleotide excision repair
pvu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PHAVU_011G085900g
   03410 Base excision repair
    PHAVU_011G085900g
   03420 Nucleotide excision repair
    PHAVU_011G085900g
   03430 Mismatch repair
    PHAVU_011G085900g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvu03032]
    PHAVU_011G085900g
   03400 DNA repair and recombination proteins [BR:pvu03400]
    PHAVU_011G085900g
Enzymes [BR:pvu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PHAVU_011G085900g
    6.5.1.6  DNA ligase (ATP or NAD+)
     PHAVU_011G085900g
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PHAVU_011G085900g
DNA replication proteins [BR:pvu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PHAVU_011G085900g
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PHAVU_011G085900g
DNA repair and recombination proteins [BR:pvu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PHAVU_011G085900g
   NER (nucleotide excision repair)
    Other NER factors
     PHAVU_011G085900g
   MMR (mismatch excision repair)
    Other MMR factors
     PHAVU_011G085900g
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 18615572
NCBI-ProteinID: XP_007132332
UniProt: V7AJQ4
LinkDB All DBs
Position
11
AA seq 808 aa AA seqDB search
MVHSFKFALCFRSSFPFSFYSSQTVRVSSLFSFPLSLPSVSLRAMSKPPSAFDALMSGAR
AAAKKSSQSKPQTPNLSSSPKKRKSPHSASSQNPSNSKSPKLPSPPVTVEPEQAAVKPEQ
AVKPEEAVKPEEAVKPEEAIKPEQRKVRHLSSSNSSNGKTVELIKQVPQLKQKPSSFDPA
SVTAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNMLRTVMLVTPEDLVPIVYLSAN
RIAPAHEGLELGIGESIISKALAEAYGRNESWIKTQYQKKGDLGLVAKESRSSQPMMWKP
EALTIRKVFNTFHLIAKESGKDSQEKKKNHIKALLVAATECEPQYLIRLLQAKLRIGYAE
QTLLAALGQAAAYTEEHSKPPPEIQSPLDKASDIVKQVYSVLPDYDKIISALLTEGLWML
PKNCKFTPGVPIRPMLSKAAKGVTEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYS
RQAERNTEKFPDVAAAVSRLKKPGVSSFILDCEIVAYDRATQKLLSFQTLTTRARKKVEI
EDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQ
NFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMENLGDSVDLVPIAAFHGR
GKRTGVYGSFLLACYDNNNEEFQSICKIGTGFAESDLVERSSSLRSNVISKPKSYYRFGE
TINPDVWFEASEVWEVRAADLTISPVHRAAAGIVDPKKGISLRFPRLVRLRHDKTPEQAT
SAEQVAELYKAQKHNQANKQDDEDEEDY
NT seq 2427 nt NT seq  +upstreamnt  +downstreamnt
atggttcattcattcaagttcgcattgtgttttcgatcctcttttcccttttccttctat
tcctcccaaactgttagggtttcctctctcttctctttccctctctctctcccctccgtt
tctctccgcgccatgtccaagccaccctccgccttcgacgctctcatgtccggcgcccgc
gccgccgccaagaagagttcccagtccaaaccccaaacacccaatctttcatcatccccc
aagaaaagaaaatccccacactccgcttcctcacaaaaccctagcaacagcaaatccccc
aaactgccttctccgcccgtaaccgttgaaccggagcaagctgctgttaaaccggagcaa
gctgttaaaccggaagaagctgttaaaccggaagaagctgttaaaccggaagaagctatt
aaaccggaacaacggaaggtccgccacctgtcgtcgtctaattcttcgaacgggaagacc
gtggagctgattaagcaagttccgcagctgaagcagaaaccatcgagtttcgaccccgct
tcggtgactgcatgggagaagggacagccagtgccgtttctctttctcgctttggcattt
gatatgatttctcaggaaagtggaagaattgttatcactgacattgtttgcaatatgctg
cggactgtgatgctcgtcacgccggaggatcttgttcccatcgtttacctctccgcgaac
cggattgcgcctgctcatgaagggttggagttgggaatcggcgagtcgatcatttccaag
gcgctcgcggaggcctatggaaggaacgagtcgtggattaagactcagtatcagaaaaaa
ggggatttgggcttggttgctaaagagagccgttcgtctcaacctatgatgtggaagcct
gaagcattgaccattaggaaggttttcaacacttttcaccttattgctaaggaatctgga
aaagacagtcaagagaaaaaaaagaaccatatcaaggcacttcttgttgctgcaactgag
tgtgaacctcaatatctaattcgtttgcttcaggcgaagttgcgaattggttatgcagaa
caaactcttttggctgcattaggccaagctgcagcgtacactgaagaacactctaaacca
cctcctgaaattcagtctcctttagacaaggcttcggatattgttaaacaagtctattct
gttcttcctgactatgacaaaataatatctgcactgcttacggagggtctatggatgctt
ccaaagaattgcaaatttactcctggtgttccaattagacctatgctgtcaaaggcagca
aaaggtgtgactgaaattctaaacaaattccaggatgtggagtttacctgtgaatacaaa
tatgatggagagcgtgcccagatacattatctggagaatggttcagttgagatttacagt
agacaagcagaacggaacactgagaagtttcctgatgttgctgccgcagtttcaaggtta
aagaaaccgggtgtatcttcatttattcttgattgtgaaattgttgcatatgaccgcgca
acacagaagcttctttctttccagactcttactactcgagctcgcaagaaagtagaaatt
gaagatataaaggttaatgtttgcgtatttgcttttgatttgttgtatctaaatggccaa
gaacttcttcaggaaaacctcagagtccgtagagagcatctttatgcctcttttgaggaa
gaatctggatttcttcagtttgcaacagcattaacttcaaatgatgttgaggagatacaa
aattttcttgaccaagctgttggtgctagttgtgagggattaatcattaaaacattaaat
gaggatgctacatatgaaccagccaagcgatcactcaactggctaaaactgaagaaagat
tatatggagaatttaggggactctgtagatttggtacctattgctgctttccacggacgt
ggaaaacgtacaggagtttatggttccttcctcctggcttgctatgacaacaataatgaa
gaatttcaaagtatttgcaagattggaacgggattcgcagaatctgatcttgtagaacgt
tcttccagtcttcgttctaatgtgatttccaagccaaagtcatactatagatttggagaa
acaataaatcctgatgtctggtttgaagccagtgaggtgtgggaagtgagagcggcagac
ctgaccattagccctgtccaccgtgctgcagcgggcatagttgatccgaaaaagggcata
tctcttcgatttccacgactagttcgactccggcatgacaaaactcctgaacaggccacg
tcagccgagcaggttgctgagttgtataaagctcaaaaacacaatcaagcgaacaaacaa
gatgacgaagatgaagaagattattga

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