Pseudomonas vanderleydeniana: HU752_010245
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Entry
HU752_010245 CDS
T07587
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvw
Pseudomonas vanderleydeniana
Pathway
pvw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU752_010245 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvw03400
]
HU752_010245 (mfd)
Enzymes [BR:
pvw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU752_010245 (mfd)
DNA repair and recombination proteins [BR:
pvw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU752_010245 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXI30304
UniProt:
A0A9E6PPF8
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All DBs
Position
complement(2270309..2273758)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAATGKQHWGNLPGAALSLAIAEAASAARRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPVTTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVRLLPAKEFPLQKEALIRFKARFRERFDVDFR
RCSIFQDLNSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYDERRIDPTRPLLPPAELFLPVEDCFARLKSWPRVIASQQDVETGVGRERFAARELPNL
AIEAKANQPLAALSGFLDQFPGRVLFTAESAGRREVLLELLERLKLRPKTVDNWPEFAAG
KERLAITIAPLDEGLVLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFNDPKADYATFSAGFP
FEETPDQQSAIEAVRADMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPGRQQITADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIRKI
DGGPQGGRIEFTADTPVDPLALIKLIQGQPNRYKFEGATIFKFMVPMERAEERFNTLEAL
FERLTPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgctactgcctgccgcaacaggcaaacaacactggggcaac
ctccccggtgccgcactcagcctggccattgccgaggctgccagcgccgcccggcgcttc
accctgctactgactgccgacagccagagcgccgaacggctggaacaggagctgagtttc
ttcgctcccgatctgccggtgctgcatttccccgactgggaaacgctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgtatcgccagcctctatcggctgccggaa
ctggaacatggcgtgctggtggtgccggtcaccaccgccctgcatcgcctggccccgacc
aaattcctgctgggcagcagcctggtcctggatgtcggccagaagctggacgtggagcag
atgcgcacccgcctggaggctgccggctaccgctgcgtcgacacggtctacgaacacggc
gagttcgccgtgcgcggggccctgatcgacctgttcccgatgggcagcaagctgccatac
cgtatcgacctgttcgatgacgagatcgagacgctgcgcaccttcgacccggaaaaccag
cgctccatcgacaaggtcgattcggtgcgcctgctgccggccaaggaattcccgctgcag
aaagaggcgttgatccgtttcaaggcgcgctttcgcgagcgcttcgatgtcgacttccgc
cgctgctcgatcttccaggacctcaacagtggcatcacccctgccggtatcgagtactac
ctgccactgttcttcgaggaaacctcgacgctgttcgactacctgccgcaggacacccag
gtgttctccctgccgggcatcgaacaggctgcggaaaacttctggaacgatgtgcgcaat
cgctatgacgaacgccgcatcgacccgacccgccccctgctgccaccggccgagctgttc
ctgccggtggaagactgctttgcccgcctgaaaagctggccgcgcgtgatcgccagccag
caggacgtggaaaccggtgtcggccgggagcgtttcgccgcccgcgaactgccgaacctg
gcaatcgaagccaaggccaaccagcccctggcggcgctctccgggttcctcgaccagttc
cccggccgcgtgctgttcaccgccgaatccgccggccgccgggaagtcctgctggaactg
ctggaacgactcaagctgcgcccgaaaaccgtcgacaactggccggaattcgccgctggc
aaggaacgcctggcaatcaccattgccccgctggacgaaggcctggtgctcgacgacccg
gccctggcattgattgccgaaagtccgctgttcggccagcgcgtgatgcagcgccggcgc
cgggaaaagcgcgccgacgccaacaacgacgcggtgatcaagaacctcaccgagctgcgt
gaaggcgcaccggtggtgcacatcgaccatggcgtcggccgctacctgggcctggcgacc
ctggaaatcgacaaccaggccgccgagttcctcaccctcgaatatgccgagggcgccaag
ctctacgtgccggtcgccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctcgccccactgcatcgactcggctcggaaacctggcagaaagccaagcgcaaggccgcc
gagcaggtccgcgacgtcgccgccgaactgctcgacatctatgcccgccgcgccgcgcgc
gaaggttatgcgttcaacgatccgaaggccgactatgcgaccttcagcgccggcttcccc
ttcgaggaaaccccggaccagcagagcgccatcgaggcggtacgcgccgacatgctcgcc
gccaagccgatggaccgcctggtctgcggtgacgtcggcttcggcaagaccgaagtggcc
atgcgcgcagccttcatcgccgtgcacggtggcaggcaggtggcgatcctggtgccgacc
accctgctcgcccagcaacactacaacagcttccgcgaccgcttcgccgactggccggtg
accgtcgaggtgatgagccgcttcaagtcagccaaggaagtcagcgccgccgtggccgac
ctcgccgaaggcaagatcgacatcgtcatcggcacccacaagctgctgcaggacgatgta
aagatcaagaacctgggcctggtgatcatcgacgaggaacaccggttcggcgtgcgccag
aaggaacagctcaaggccctgcgcagcgaggtcgacatcctcaccctgaccgccacgccg
attccgcgcacgctgaacatggccgtgtcgggcatgcgtgacctgtcgatcatcgccacg
ccgccagcgcgccgactgtcggtacgcaccttcgtcatggagcagaacaagagcacggtc
aaggaagcgctgctgcgcgagctgctgcgcggcggccaggtctactacctgcacaacgac
gtgaagaccatcgagaagtgcgccgccgacctcgccgagctggtgccggaagcccgcatc
ggcattggtcacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtaccg
agcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagttgcaccag
ttgcgtggtcgggtcggacgcagccaccaccaggcctacgcctacctgctgacgccgggt
cgccagcagatcaccgccgacgcggagaaacgcctggaggcgatcgccaacacccaggac
ctgggggccggcttcgtcctcgccaccaacgacctggagatccgtggcgccggcgaactg
ctcggcgacggccagagcggccagatccaggcggtgggtttcacgctgtacatggaaatg
ctcgagcgcgcggtcaaggccatccgcaagggcgaacagccgaacctcgaccagccgctg
ggtggcggcccggagatcaacctgcgcctgccggcgctgatccccgaagactacctgccg
gacgtgcacgcgcgcctgatcctctacaagcgcatcgcctcggcgaccgacgaggaaggc
ctcaaggacctgcaagtggagatgatcgaccggttcggcctgctgcccgagccgaccaag
aacctggtgcgcctgacactgctcaagctgcaggccgagcaactggggatcaggaagatc
gacggcggcccgcaaggcggacgcatcgagttcaccgcggacacaccggtcgatccactg
gcactgatcaagctgatccagggacaacccaaccgctacaagttcgaaggcgccacgatc
ttcaagttcatggtaccgatggaacgtgcggaagaacgctttaatacactggaggcgctg
ttcgagcgcctcaccccgaaatctgcctga
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integrated database retrieval system
