Pseudomonas xantholysinigenes: HU772_008330
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Entry
HU772_008330 CDS
T07643
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pxn
Pseudomonas xantholysinigenes
Pathway
pxn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU772_008330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxn03400
]
HU772_008330 (mfd)
Enzymes [BR:
pxn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU772_008330 (mfd)
DNA repair and recombination proteins [BR:
pxn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU772_008330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QXI40069
UniProt:
A0A9E6PZP5
LinkDB
All DBs
Position
complement(1838980..1842429)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPKLSATAGKQTWGNLPGAALSLAVAEAASTAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQKVDVEQMRSRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKQPY
RIDLFDDEIETLRTFDPESQRSIDKVDSIRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLTSGIIPAGIEYYLPLFFEETATLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEERRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEDLDAGAGRERFPARALPNL
AIEAKANQPLAELANFLDQFSGRVLFTAESAGRREVLLELLERLKVRPETVDSWADFITG
KARLAITIAPLDDGLLLDDPAIALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQAAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVASAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGAQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEAL
FERLAPQTN
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctacctaaactgtcggccacggccggcaaacaaacctggggcaac
ctgcccggcgcggccttgagcctggccgtcgccgaggcggccagtaccgctggtcgcttc
accctgttgctgactgccgacagccaggccgccgaccgcctggagcaggagctgcgcttc
ttcgcgcccgatctgccggtgctgccgtttcccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctctatcggctgccggag
ctggaccacggcatcctcgtggtgccgatcaccaccgccctgcaccgtctggcgccgacc
cgcttcctgctgggcagcagcctggtgctggacgtcggccagaaggtcgacgtcgagcag
atgcgcagccgcctcgaggccagcggctaccgctgcgtcgacacagtgtacgaacatggc
gagttcgccgtgcgtggcgcgctgatcgacctgttccccatgggcagcaagcagccgtac
cgcatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgaccccgagagccag
cgctccatcgacaaggtcgactcgatccgcctgctgccggcgcgcgaattccccatgcaa
aaggaagaagtgacccgtttcaaggcacgcttccgtgaacgcttcgacgtcgacttccgc
cgcagcgcgatcttccaggacctcaccagcggcatcattcctgccggcatcgagtactac
ctgccgctgttcttcgaagaaaccgcgaccctgttcgactacctgccagcggacacccag
gtgttctcgctacccggcgtggaacaggccgccgagcacttctggaacgacgtgcgtggg
cgctacgaagagcgccgcggcgacctcagccggccgctgctgcccccggcggagctgttc
ctgccggtggaggactgcttcgcccgcctcaagcaatggccacgggtggtggtcagcagc
gaggacctcgatgccggcgccgggcgcgaacgctttccggcccgcgccctacccaacctg
gcgattgaggccaaggccaaccagcccctggcggaactggcgaatttcctcgaccagttc
agtggccgggtgctgttcaccgccgaatccgccggccgacgcgaagtgctgctggaactg
ctcgagcgcctgaaggtacgccccgagacggtcgacagctgggccgacttcatcaccggc
aaggcacgcctggcgatcaccatcgccccgctggacgacggcctgctgctggacgacccg
gccatcgccctggtcgccgaaagcccgttgttcggccaacgcgtgatgcaacgccgacgc
cgcgagaaacgcggcgaggcggccaacgacgcggtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccatggcgtgggccgctacctgggcctggcgacc
ctggaaatcgacggccaggccgccgaattcctcaccctcgaatacgccgagggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgctgcaccggctcggctccgaggcctggcagaaggccaagcgcaaggccgcc
gagcaggtgcgcgacgtcgccgccgaactgctcgacatctacgcacgccgcgccgcgcgc
aaaggctacgctttcgccgatccggccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaacccccgaccagcaggccgccatcgaagcggtgcgcgccgacatgctggcc
ggccagcccatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgccgccttcattgccgtgcacagcggccgccaggtcgcggtgctggtgcccacc
accctgctcgcccagcagcactacaacagcttccgggaccgcttcgccgactggccggta
aaggtcgaggtgatgagccgcttcaagtcggccaaggaagtcgccagcgccgcagcggaa
ctggccgaaggcaagatcgacattctcatcggcacccacaagctgctgcaggacgatgta
cgcttcaaggacctgggcctggcgatcatcgatgaggagcaccgtttcggcgtacgtcag
aaggagcagctcaaggccctgcgcagcgaggtggacatcctcaccctgaccgcaacgccc
atcccgcgcacgctgaacatggcggtctcgggcatgcgcgacctgtcgatcatcgccacc
ccgccggctcggcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaggaggcgctgctgcgcgagctgctgcgcggcggccaggtgtactacctgcacaacgat
gtgaagaccatcgagaaatgcgccgcggagcttgccgaactggtgcctgaggcacgcatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaaacgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccag
ctgcgcggtcgggtcgggcgcagccaccaccaggcctacgcctacctgctgacgccgccg
cgccagcagatcagcgccgatgccgaaaaacgcctggaggccatcgccaacacccaggac
ctcggcgcaggcttcgtcctggccaccaacgacctggagatccgcggcgccggcgagctg
ctcggcgaaggccagagcggacagatccaggccgtcggcttcaccctgtacatggaaatg
ctcgagcgcgcggtcaaggccatccgcaagggtgcccaaccgaacctcgagcagccgctg
ggcggcggtccggagatcaacctgcgcctgccggcgctgatccccgaggactacctgccc
gacgtgcatgcgcgcctgatcctgtacaagcgcattgcctcggcggccgacgaagaaggc
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgctgccggagccgaccaag
aacctgatgcgcctgaccctgctcaagctgcaggcggaaaagctcggcatcaagaaagtc
gacgctggccccaacggcggcaagctcgagttcgaagccgagaccccggtcgacccgctg
accctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggcgcgacccag
ttccgcttcctggtacctatggaacgccccgaagaacgcttcaacaccttggaggcgctg
ttcgagcgcctcgccccacaaacgaattaa
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integrated database retrieval system
