Pseudomonas zarinae: HU749_010530
Help
Entry
HU749_010530 CDS
T07889
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pza
Pseudomonas zarinae
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pza03032
]
HU749_010530 (topA)
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_010530 (topA)
Enzymes [BR:
pza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HU749_010530 (topA)
DNA replication proteins [BR:
pza03032
]
Prokaryotic type
DNA Topoisomerases
HU749_010530 (topA)
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HU749_010530 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXH96799
LinkDB
All DBs
Position
2366460..2369072
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGDQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKDKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIESEFGKKYLPDTPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQITKPGDDDVLPDMAQGDVMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPDSGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCAAPQKDPEGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVQDKS
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcgaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagccagccgccaagcgcggcaaggcagctgctggtgaa
gcgccggcgctgtcgccgaaagacaaggcgcgcaagcagctggtctcacgcatgggggtc
gatccggaacacggctggaaagccaagtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgccgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccattggtggggatgacagccgc
tacaagcgcgtggtgttcaacgaaattaccaagaaggccatccaggaagccttctcccag
ccgggcgagctggacatcgatcgggtcaacgcccagcaggcgcgtcgcttcctcgaccgc
gtggtgggctacatggtctcgcccctgctgtgggccaagatcgcccgcggtctgtcggcc
ggtcgtgtgcagtcggtcgctgtgaagctggtggtggagcgcgagcgggagatccgtgcg
ttcattcctgaagagtattgggaagtccacgccgacctcggcaccgccaagggcgccacc
gtgcgctttgacgtggcccgggagaagggtgaagccttcaagccgctcaacgaagcccag
gccatggctgcgctggagaagctcaaggcttccagctacagcatcgtcaaacgcgaagac
aagccgaccagcagcaagccgtcggcgccgttcatcacctccacgttgcaacaggccgcg
agcaatcgcctgggctttggcgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctttcggccgatgccgtggcg
atggcgcgcacttatatagaaagcgagttcggcaagaagtacctgccggacacgccgaac
gtctacagcagcaaggaaggcgcgcaggaggctcacgaagcgattcgtccgtccgatgcc
aataccgagccaagcaagctgtcgggcatggagcgcgatgccgaacgtctctacgagctg
atctggcgccagttcctggcctgccagatgctgccggcgcaatacctgtcgaccacggtc
agcgtcggtgccggcgacttcgagttgcgcgccaagggccgcatcctgaagttcgacggc
tacacccgcgtcatgccgcagatcaccaagcccggggacgatgacgtcctgccagacatg
gcccagggcgacgtgatgaagctgatcaagcttgatccgacccagcacttcaccaagcca
ccggcccgttactccgaagccagcctggtcaaagaaatggaaaagcgcggcatcggtcgt
ccttcgacctacgcagccatcatctccaccatccaggaccgcggctatgtggcgctgcac
aaccgtcgtttctattcggaaaagatgggtgacatcgttaccgagcgtttgtccgagagc
ttctcgaacctgatggactacggcttcaccgccggtatggaagagaacctcgacgatgtg
gcccagggcgaacgcgactggaaaaacgtcctcgacgagttctacggcgacttcaagaaa
aagctcgaagtggccgagagcccggacagcggcatgcgcgccaaccagccggtcatgacc
gacatcccgtgcttgacctgcgggcgtccgatgcaaatccgtaccgcctcgaccggcgta
ttcctgggatgctcgggctacagcctgccacccaaggagcgctgcaaggccacggtcaac
ctggtgccgggcgacgaaatcgctgcggacgacgagggtgagtcggaatccctggtgctg
cgcggcaagcatcgctgcccgatctgcagcacggcgatggatgcctacctgctggatgaa
aagcgcaagctgcacatctgcggcaacaacccggactgtgccggctacgagatcgaagag
ggcacttatcgcatcaagggctacgaaggcccgagcctggaatgcgacaagtgtggcagt
gagatgcagctcaagaccggccgtttcggcaagttcttcggctgcaccaacccgacctgc
aagaacacccgcaaactgctcaagagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcctgagctcaagtgcgagaaggtcaacgacacctacatcctgcgcgacggtgcc
tccggcctgttcctggcggccagccagttcccgaaaaaccgcgagacccgtgcaccgttg
gtgatggaaatcgtgccgcacaaggacgagatcgatccgaagtaccatttcctctgtgca
gcgccgcagaaggatccggaagggcgcccggcggtcattcgctacagccgcaagaccaag
gagcaatacgtgcagaccgaagtcgacggcaagccgactggctggaaagcctactacgac
ggcggtaagtggacggtgcaagacaagagctga
DBGET
integrated database retrieval system
