Stutzerimonas zhaodongensis: KQ248_19395
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Entry
KQ248_19395 CDS
T09079
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pzd
Stutzerimonas zhaodongensis
Pathway
pzd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KQ248_19395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pzd03400
]
KQ248_19395 (mfd)
Enzymes [BR:
pzd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KQ248_19395 (mfd)
DNA repair and recombination proteins [BR:
pzd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KQ248_19395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWV16611
LinkDB
All DBs
Position
4257659..4261105
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPPMPAASGKQTWGNLPGAALSLAIAEAASNADRFTLLLTADSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPELTHGVLVVPITTALHKLAPK
RFLLGSSLVLDVGQKLDVEQMRARLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKESVTGFRARFRERFDVDFR
RCPVYQDLSTGITPAGIEYYLPLFFDETSTLFDYLPGDTQVFSLPGIEQAAEHFWKDVRT
RYEERRVDPERPLLPPAELFMAVEDCFAHLKLWPRIVASQDNVETGIGRERFPASRFPEL
AIDAKAPEPLGALRRFLDEFPGRVLFTAESAGRREVLLELLARLKLRPQEVAGWPQFVES
GERLAITIAPLDDGLLLQDPALALIAENPLFGQRIMQRRRREKGRDAGENVIKNLTELRE
GAPVVHIDHGVGRYHGLVTLEIEGQAAEFLMLQYAEEAKLYVPVSSLHLIARYTGSDDAL
APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFEDPQLDYETFSAGFPF
EETPDQQAAIEAVRNDMLAPKPMDRLICGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTT
LLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEIQAAVQELAEGKVDILIGTHKLLQDDVK
FTNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATP
PARRLSVRTFVMEQQNSVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIG
VGHGQMRERELEQVMGDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRKAMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL
GDGQSGQIQAVGFTLYMEMLERAVKSIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPD
VHARLILYKRIANAADENGLRELQVEMIDRFGLLPEPAKHLVRLTLLKLQAASLGITKID
AGPQGGRIEFAADTSVDPMVLIKLIQSQPNRYKFEGATMFKFQVPMERAEERFNTLEALL
ERLSVEKP
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtattgcgccttccgcccatgcctgccgccagcggcaagcaaacctggggcaac
cttcctggtgccgcgctgagcctggccattgccgaagcagccagcaacgcagatcgattc
actctccttcttaccgccgacagtcagagcgccgaacgcctgcaggaagagctcgccttc
tttgcgcctgacctgccggttctgcacttccccgactgggagacgctgccctatgacgtg
ttttcgccgcatcaggacatcatctcccagcggattgcagcgctctatcagctgccggag
ctgacgcacggcgttctggtagtcccgatcaccacagcgctacacaaacttgctccgaag
cgattcttgctcggatccagcctggtactggatgtcggccagaagcttgatgtcgagcag
atgcgggcgcgccttgaagcggccggctatcgctgtgtcgatacagtctacgaacacggc
gagttcgcagtccgcggcgcgctgatcgacctgttcccgatgggcagccccctgccctac
cgcatcgacctgttcgacgacgaaatcgaaacgctgcgcaccttcgatccagagaatcag
cgttccatagataaagtcgagtcgatccgtttgctgccggcacgcgagttcccgctgaag
aaggagtcggtcactggcttccgcgcacgcttccgtgagcgcttcgacgtggatttccgc
cgctgcccggtttaccaggatctatccaccggcatcacgccggccggtatcgagtactac
ctgccgctgttcttcgacgagacctcgacgctgttcgattatctgccgggagacacccag
gtgttctcgctgccgggaatcgagcaggctgcggagcacttctggaaagacgtccgtact
cgctacgaagagcgtcgcgtcgaccctgagcgcccattgctgccacccgccgagctgttc
atggcggtcgaagactgctttgcgcatctgaaactctggccgcggatcgtggccagccag
gacaatgtagaaaccggcatcggccgcgagcgctttccagccagccgcttccctgagctt
gcgatcgacgccaaggcacctgaacccttgggtgcattgcgacgctttctcgacgaattt
ccaggccgcgtacttttcaccgccgaatcggctggccgtcgcgaggttctgctcgagctg
ctcgctcggctgaagctgcgtccgcaggaagttgctggctggccgcagttcgttgaaagc
ggcgagcgtctggcgatcaccatcgccccgctcgacgacggcttgctgctgcaagacccg
gccctggcgctgatcgccgaaaacccgctgttcggccagcgcatcatgcaacgccgccgg
cgtgaaaaaggtcgtgatgccggcgagaacgtcatcaagaacctcaccgaactgcgcgaa
ggcgcgccggtggttcacatcgaccacggtgtcggccgttatcacggtttggtcaccttg
gagatcgaaggtcaggccgccgagttcctgatgctgcagtacgccgaagaggccaagctc
tacgtaccggtctccagcctgcacctgattgctcgttacaccggcagcgacgatgcactg
gcgccgctgcaccgcctgggctcggaaacctggcagaaagccaaacgcaaggccgccgaa
caggtacgcgacgtagccgcagagctgctcgacatctatgcccgtcgcgccgcgcgggaa
ggctacgccttcgaagacccgcaactcgattacgaaaccttcagcgccggcttcccgttc
gaggaaacgccggaccagcaagccgcgatcgaagcggtacgcaacgacatgcttgcaccc
aagcctatggaccgcctgatttgcggcgatgtgggcttcggcaagaccgaagtggccatg
cgcgccgccttcatcgccgttcacagcggccgtcaggtggcggtgctggtgccaaccact
ctacttgcccagcagcactacaacagcttccgcgaccgtttcgccgattggccggttcgc
gtcgaggtgatgagccgtttcaaatcggccaaggagatccaggctgctgtgcaggagctg
gccgaaggcaaggtcgacattctcatcggtacccacaaactgctgcaggacgacgtcaag
ttcaccaaccttgggctggtgatcattgacgaagaacaccgcttcggggtgcgccagaag
gaacagctcaaagcgctgcgcagcgaagtcgacatcctcaccctgaccgccacaccgatt
cctcggactttgaacatggccgtcgccggcatgcgcgacctctccatcatcgccacgccg
cctgcgcgccggctgtcggtgcgcaccttcgtcatggagcagcagaactctgtgatcaag
gaagcgctgctgcgtgagctgttgcgcggtggccaggtctattacctgcacaacgacgtg
aagacgatcgagaaatgcgccgccgatcttgccgaactggtgccggaagcccgcattggc
gtaggccacggccagatgcgcgaacgcgaactcgaacaggtgatgggcgacttctaccac
aagcgctttaacgtgctgatcgcctcgaccatcatcgagacgggcatcgacgtaccgagc
gccaacactatcatcatcgaacgtgccgacaagttcggcctggcccagctgcatcagctg
cggggacgcgttggacgcagccaccaccaggcctacgcctatctgctgacgccaccacgc
aaggccatgaccccagacgccgagaagcgcctggaagccatcgccaacgcgcaggatctc
ggagcaggcttcgtcctcgctacccacgacctggagattcgcggcgcgggcgagctgctc
ggcgatggccagagcgggcagattcaagcggtcggtttcacgctctatatggagatgctc
gaacgtgcggtcaaatccatccagaaaggtgaacagccgaacctcgatcaaccgctgggc
ggcggaccagagatcaatctgcgcgtcccggcgttgattccggaagactacctaccagat
gtgcatgcgcggctgatcctctacaagcgcatcgccaacgccgccgacgagaacggtctg
cgtgaactgcaggtcgagatgatcgatcgcttcggtctgctgcctgaacctgccaagcac
ttggtcaggctgaccctgcttaagctgcaggcggccagcctcggcatcaccaagatcgac
gccggccctcaaggaggacgtatcgagttcgctgcggataccagcgtcgacccgatggtg
ctgatcaaactgatccagagccagcccaaccgttacaagttcgaaggcgccacgatgttc
aaatttcaggtgccgatggagcgtgccgaagagcgcttcaacacgcttgaggcattactc
gaacgtctgtccgtggaaaagccgtaa
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