Rahnella aquatilis HX2: Q7S_20240
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Entry
Q7S_20240 CDS
T01850
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
raa
Rahnella aquatilis HX2
Pathway
raa02020
Two-component system
raa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q7S_20240
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q7S_20240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
raa03021
]
Q7S_20240
Transcription machinery [BR:
raa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q7S_20240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AFE60257
LinkDB
All DBs
Position
4431495..4432928
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDLHEEIDSVE
TTDSEGLDTREALEQKDMPEELPLDATWDEIYTAGTPSGTGNDYSDDELPIYQGETTQTL
QDYLMWQVELTPFSDTDAAIATSIVDAVDDTGYLTVSLDDILESVGDENVTMDEVEAVLK
RVQRFDPVGVAARDLRDCLLIQLSQYATDTPFITEARLIISEHLDLLANHDFRALMRSTR
LKEDTLKGAMLLIQSLDPRPGQSINTGESEYVIPDVLVRKVSGVWAVELNSDSIPRLKIN
QQYAAMGNSARSDSDGQFIRSNLQEAKWLIKSLESRNDTLLKVTRCIVEQQQAFFELGEE
FMKPMVLADIASAVEMHESTISRVTTQKFLHSPRGIFELKYFFSSHVSTDSGGEASSTAI
RALVKKLIAAENPVKPLSDSKLATLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcagactcagccaacaactggcaatgactcctcagttacaa
caggccatccgcttgttgcaactatccacgcttgagctccagcaggagatccaactcgcg
ctggagagcaaccctctgttggaacaaaccgaccttcatgaagaaatcgactcggtagaa
accaccgacagcgaagggttagacacccgcgaggcactcgagcagaaagacatgccggaa
gagttgccgctggacgccacctgggatgagatttacaccgcaggcacgccgtcaggcacc
ggcaatgattacagcgacgatgagctaccgatttaccagggcgaaaccacgcagacactt
caggattacctgatgtggcaggtcgagctgacgccgttctctgataccgatgccgcgatt
gccacgtcaatcgtcgatgcagtggatgacaccggttacctgaccgtctcccttgacgac
attctcgaaagcgtcggtgatgaaaatgtcaccatggacgaagtcgaagccgtacttaag
cgcgttcagcgttttgatccggtgggtgtcgccgcccgtgacctgcgcgactgcctgctg
atccagctttctcaatatgcgactgacacgcctttcatcactgaagcccgtcttatcatc
agcgaacatctcgatttgctggcgaaccatgatttccgcgcacttatgcgatcaacccgg
ttaaaagaagatacactgaaaggagcgatgctcctgatccagtctcttgatccgcgtccg
ggccagtctatcaacaccggtgaatccgaatacgtgatcccggatgtgctggtgcgtaaa
gtgtcaggtgtctgggcggtagaactcaattccgacagcattccgcgtctgaagattaac
cagcagtacgccgcgatggggaattcagcacgcagcgacagcgacgggcaatttatccgc
agcaatctgcaggaagccaagtggttaatcaaaagcctggaaagccgtaacgacacgctg
ttgaaagtgacgcgctgcatcgttgagcagcagcaggcgttctttgaactgggtgaagaa
tttatgaaacctatggtactggcagatattgccagtgccgtggaaatgcacgaatcgacg
atttcacgtgtgacgacgcagaagttcctgcacagcccgcgtggcattttcgaactgaag
tatttcttctccagccatgtcagtacagacagcggtggcgaggcatcgtcaaccgcgatc
cgggcgctggtgaagaaattaatcgcagcggagaatcctgtaaaaccgctcagtgacagt
aagttagcgaccctgctttccgatcagggaattatggttgcgcgtcggactgtcgccaaa
taccgagagtctttgtccatcccgccctcaaaccaacgtaaacagttagtttga
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