Ruminococcus albus: Rumal_3283
Help
Entry
Rumal_3283 CDS
T01387
Name
(GenBank) Exodeoxyribonuclease V
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ral
Ruminococcus albus
Pathway
ral03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ral00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Rumal_3283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ral03400
]
Rumal_3283
Enzymes [BR:
ral01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Rumal_3283
DNA repair and recombination proteins [BR:
ral03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Rumal_3283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_4
UvrD_C_2
SH3_13
Viral_helicase1
HHH_5
AAA_11
nSTAND3
AAA_28
AAA_16
Helicase_RecD
AAA_22
AAA_18
ATPase_2
SLFN-g3_helicase
RsgA_GTPase
AAA
DEAD
HHH_2
AAA_29
Zeta_toxin
NTPase_1
cobW
SH3_12
AAA_17
SMC_N
AAA_14
T2SSE
PIF1
Motif
Other DBs
NCBI-ProteinID:
ADU23746
UniProt:
E6UJA0
LinkDB
All DBs
Position
pRUMAL01:2268..4445
Genome browser
AA seq
725 aa
AA seq
DB search
MIIKGKIDKIFAVRGDWASILVSGLPKEELKNAGFALSKNQIMFVGNIPNPVEECEMGFN
GDWVNHPKYGMQFKVTASNLLLNDKSSLFKYLTSGFVEGCGKKIAEAIIEKFGDNAIDVI
SNDFEKLTEIPKIGKAKAKKIHDSYINTCGMMHIMNLFKGQITQKKCVKIHETYGDKAEK
IIQDNPYQLICDIRGFGFKTVDELAVSSGIALNDPRRVKAAIIHTLDTISNDQGHCFIML
DELGDNIRSLIDNIDVPDKVIIKEIKSLYEEEKIILEKDGDFVRVYLKELYDAENDLARK
ISIMKKYRNRAYREDIVDDTIELITSRETNPDFEFEPLQVEAVKTSLRNHFSIITGGPGT
GKTTIINAVAKAAIAMKFGVILLAPTGRASRKLAESTGLEAYTIAKYTFSKGAIVGDEIN
NKPNRLFIVDETSMIDVENAAKLFYLIKKTDTVVLVGDIDQLPSIGAGNFFRDLVSSGLV
PMVKLTFTHRFKGSIAENARSINRGSSKFKEDDEFEIIKEKDPIRRQELVLAKYYEELKN
AGGNYKRVQIIVPMRQRGDTCTNTLNKIIRDKVNPLRLKQQVFGPSQFRVGDRVMQTSND
SELGVANGDCGIVYAIDNDNASMDVMMDVGGRKTYNKLQSTNLTIAYAITVHKSQGSEYM
TVISAYGNADYVMLQRNLLYTAVTRAKNKMILIADPQALYRAVNNIEPIIRNTSINEKIA
KYDRI
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgattataaaaggaaaaatagacaagatctttgccgtaagaggagattgggcatctata
ttagtttccggactccctaaagaagaactgaaaaatgcaggatttgcactttcaaaaaat
cagataatgtttgtagggaatataccaaatcctgtagaagagtgcgaaatgggattcaat
ggggattgggtcaatcatcctaaatacggaatgcagttcaaggtaactgcctctaatctt
ctgctgaatgacaagagctcactatttaagtatctcacttcaggattcgtcgagggctgc
gggaaaaaaatagcagaagcaataattgaaaaattcggggataatgctattgacgtaatc
agtaatgactttgaaaaattgacagagataccaaagatcggaaaagcaaaggcaaaaaag
atccatgattcatatattaatacgtgtggtatgatgcacataatgaatctttttaaaggt
cagatcactcagaaaaaatgcgtaaagatccacgagacttatggtgataaggccgaaaag
atcattcaggataatccttatcagctgatatgtgatataagaggattcggattcaaaaca
gttgatgaattggctgtttcttccggaatagctcttaatgatccaagaagagtaaaagca
gcaataatccacacgcttgatacaataagcaatgatcaggggcactgcttcatcatgctt
gatgagcttggtgataatataagaagcctgatagataacatcgacgtacctgataaagtt
ataatcaaggagatcaaaagtctttacgaggaggaaaagatcattcttgaaaaggatggc
gacttcgttcgtgtctatctgaaagaactgtatgacgctgaaaatgaccttgcaagaaaa
ataagcattatgaagaaatacaggaacagagcttacagagaagatattgtagatgataca
atcgaattaattacttcaagagaaacaaatccggattttgagtttgagccgcttcaggtc
gaagctgtaaaaacatctttaagaaatcatttcagcattatcaccggcggccccggcaca
ggaaaaactactattatcaatgcagttgctaaagcagcgattgcaatgaaattcggggtt
atacttctggctccaacaggaagagcatcaagaaaactcgcagaaagtacaggacttgaa
gcctatacgatagcaaaatacactttcagtaaaggtgctatcgttggcgatgagataaat
aacaaaccgaacaggctgtttatagttgatgaaacatcgatgatagatgtagaaaatgcc
gcaaagctgttttacttgataaagaaaacagacaccgttgtgctggtcggagatatcgat
cagcttccatctatcggagcaggaaactttttcagagatcttgtcagctcagggcttgtt
cctatggtaaaacttacttttactcaccgattcaaaggctcaattgcggagaatgcaagg
tcgatcaatcgaggttcaagcaaattcaaagaagacgatgaatttgagatcatcaaagag
aaagatcctatcagaaggcaggaattagtcttagccaagtattacgaagaactaaaaaat
gcaggaggtaattataaaagagtgcagataatcgttcctatgagacaaagaggagacacc
tgcacaaatacgcttaataaaataatacgcgataaagttaatccactaagactaaagcag
caagtctttggtcccagtcagttcagagtcggagacagagttatgcagacttcaaatgat
tctgaacttggagttgcaaacggcgattgcggtatagtatatgccatagacaacgataat
gcatcaatggacgtaatgatggatgtaggcggacgcaagacctacaataaactccagtct
acaaaccttaccatcgcgtatgcgatcaccgtacacaagagccagggttctgaatacatg
acggtaatttctgcatacggtaatgcagactatgtaatgcttcagcgtaacttgctctat
actgctgtaacaagagcaaaaaataaaatgatactgatagctgacccacaggcgttgtac
agagctgtcaataatattgaacccattattagaaacacctctataaatgaaaagatcgcc
aaatatgacaggatataa
DBGET
integrated database retrieval system
