Rhodococcus antarcticus: RHODO2019_08175
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Entry
RHODO2019_08175 CDS
T09186
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rant
Rhodococcus antarcticus
Pathway
rant03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHODO2019_08175 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rant03400
]
RHODO2019_08175 (ligD)
Enzymes [BR:
rant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHODO2019_08175 (ligD)
DNA repair and recombination proteins [BR:
rant03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHODO2019_08175 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UZJ26364
LinkDB
All DBs
Position
1700778..1702172
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AA seq
464 aa
AA seq
DB search
MQERLSDYRARRDPALTPEPASDDPRGTGVDGRAFVVQEHHASSLHWDLRLEHEGVLVSW
AVPKGLPAAPGVERLAVHTEDHPLAYARFAGTIPEDEHGGGWMRITDVGPLEVARWTADE
VELTLHGAVLQGRHRLRRRPDGGHDHWTLTRLDPPTDPDHEAVPDAVAPMLAEHGDPPTG
DGWTYEVKWDGHRALARVVGGRLALSSRGGHDVTASVPGIAGLGEALAGRDALLDGELVV
LGPDGRPDFGLLQQRMGAPRARGPRVTYLVFDVLHLDGRSWLHRPHAERRGQLDSLALAG
PVWATPPALPGRAEDVLAAVRAQGLEGVVAKLGSSAYTPGRRSDAWRKLVNLHKADVVVG
GWQPGAGRRAGMVGSLLLGVLEQGGLRYVGHVGTGFTDRELVRLGTQLKTLSRTSSPFSG
AVPAARARTARWVEPELAAEVAMAGWTGDGLLRQARWRGLVDGG
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggaacgactgtccgactaccgcgccaggcgggaccctgcgctgacgcccgagccc
gcctcggacgacccgcgcggcaccggggtggacgggcgcgccttcgtcgtccaggagcac
cacgccagctccctgcactgggacctgcgcctggagcacgagggggtcctcgtctcctgg
gccgtgcccaagggcctgcccgccgcgccaggggtggagcgcctggccgtgcacaccgag
gaccacccgctggcctacgcccgcttcgccggcaccatccccgaggatgagcacgggggc
gggtggatgcggatcaccgacgtcggcccgctcgaggtcgcccggtggaccgccgacgag
gtcgagctgaccctgcacggggcggtgctgcagggccggcaccggctgcggcggcgcccc
gacggggggcacgaccactggacgctgacccgcctggacccgccgaccgaccccgaccac
gaggcggtgcccgacgccgtggccccgatgctggccgagcacggcgacccacccaccggc
gacggctggacctacgaggtgaagtgggacgggcaccgggcgctggcccgcgtcgtcggc
gggcgcctcgcgctgagcagccgtggcggccacgacgtcaccgcctcggtccccgggatc
gccgggctgggcgaggcgctggccgggcgcgacgccctgctcgacggcgagctcgtggtg
ctgggtccggacggccggccggacttcggcctgctccagcagcggatgggtgccccacga
gcacgcggaccgcgggtcacctacctggtcttcgacgtgctgcacctggacgggcgctcc
tggctgcaccgaccgcacgccgagcgccgcgggcagctggactcgctcgcgctggccggg
ccggtgtgggccaccccgccggcgctgcccggccgcgcggaggacgtcctcgccgcggtg
cgcgcccaggggctggagggcgtggtggccaagctgggctcgagcgcctacacgccgggc
cggcgcagcgacgcgtggcgcaagctggtgaacctgcacaaggcggacgtggtcgtgggg
ggctggcagcccggggccgggcgtcgcgcggggatggtcggctcgctgctgctcggggtg
ctcgagcagggcgggctgcggtacgtcggccacgtcggcaccgggttcaccgatcgcgag
ctggtccggctcggcacgcagctgaagacgttgtcgcgcaccagctcaccgttctccggg
gccgtgcccgccgcccgcgcccgcaccgcgcgctgggtggagccggagctggccgccgag
gtggccatggcgggctggacgggcgacgggctgctccggcaggcacggtggagggggctg
gtggacggtggctga
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