Rhodopirellula baltica: RB5316
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Entry
RB5316 CDS
T00134
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rba
Rhodopirellula baltica
Pathway
rba00040
Pentose and glucuronate interconversions
rba01100
Metabolic pathways
rba02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RB5316
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RB5316
Enzymes [BR:
rba01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RB5316
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-ProteinID:
CAD74169
UniProt:
Q7US15
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All DBs
Position
2745433..2746494
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AA seq
353 aa
AA seq
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MATARLKLPSASNSYHSMANLSMNDQPSNPLFAGLLSIFFVAFVWTPLASAEESDAPIGW
ASVSGRGVETTTGGRNGDVVTARTAEELAEYASSPEPLTILIEGTITGDGQIKISSNKTL
LGLGASTSLKNIELNMSGVSNIIIRNLHISDARDAIALRRTHHVWVDHCDLSECGDGLLD
ITHQSDFVTVSWTRFSKHHKTMLINSGTSQPEDSGYLNTTIHHCRFDGSDTRNPRVGYGK
VHVFNCLYTKSDYGIGLHSQCLVLAERNHFDQVKHPIKQMYRPDPTDIHHGFCESVENVF
QDCRGAQDDEGKSFPAKEFYEYESKMDDVARVPEIVQSNAGPQEHIGRTASRQ
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
gtggctaccgctcgattgaaactgcccagtgcctccaattcctatcactcgatggcgaac
ctcagcatgaatgaccaaccgtccaatccgctatttgccggactgctatcaattttcttc
gtcgccttcgtgtggacgccgctcgcttccgccgaggaaagtgacgctcccatcggatgg
gcctcggtcagtggccgtggagtcgaaacgaccactggtgggagaaacggtgatgtcgtg
acagcccgcaccgcagaggagttggccgagtacgcgtccagccccgagccactaaccatt
ctgatcgaaggaacgatcaccggagacggtcaaatcaagatctcgtccaacaaaacactg
cttggtttgggagcatccacatcgcttaaaaacatcgaactgaacatgagcggtgtttcg
aacatcatcattcgcaacctccacatctcggacgctcgcgatgcgatcgcattgcggcgt
acccatcatgtgtgggtcgaccactgcgacctctcggaatgtggtgatggcttgctcgac
atcacccaccagtccgacttcgtgaccgtttcctggacgcggttttcgaagcatcacaaa
acgatgttgatcaacagcggcaccagccaaccggaagattccggctacctcaacacaacc
attcatcattgcaggttcgatggttccgacacacgcaacccgcgagtgggttatggcaag
gttcacgtgttcaactgcctctacaccaaaagtgactacggaatcggattgcactcgcag
tgcttggtactcgccgaacgcaaccactttgatcaagtgaagcatccgatcaaacaaatg
tatcgcccggatccgaccgacatccatcatggattttgcgagtcggtggagaatgttttt
caggattgtcgaggagcacaggacgacgagggaaagagctttcccgcgaaagaattttac
gaatacgaatccaagatggatgacgtggcccgtgtaccggagattgtccaatccaacgcg
ggcccccaagaacacatcgggagaacagcgtcgcgacagtga
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